src/hg/makeDb/schema/all.joiner 1.736
1.736 2009/09/24 22:27:04 tdreszer
Added wgEncodeGencode V3 tables
Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.735
retrieving revision 1.736
diff -b -B -U 4 -r1.735 -r1.736
--- src/hg/makeDb/schema/all.joiner 18 Sep 2009 21:09:04 -0000 1.735
+++ src/hg/makeDb/schema/all.joiner 24 Sep 2009 22:27:04 -0000 1.736
@@ -566,8 +566,15 @@
hg18.wgEncodeGencodeAutoRel2.name unique
hg18.wgEncodeGencodeManualRel2.name unique
hg18.wgEncodeGencodePolyaRel2.name unique
+identifier wgEncodeGencodeClassesV3
+"Link together Gencode gene model (Known) and class for July 2009 Data Version"
+ hg18.wgEncodeGencodeClassesV3.name
+ hg18.wgEncodeGencodeAutoV3.name unique
+ hg18.wgEncodeGencodeManualV3.name unique
+ hg18.wgEncodeGencodePolyaV3.name unique
+
identifier acemblyName dependency
"Link together Acembly gene model structure and peptide."
$hg,$mm.acembly.name
$hg,!hg17,$mm.acemblyPep.name unique minCheck=0.90
@@ -1248,10 +1255,8 @@
hg17.spMrna.mrnaID minCheck=0.50
hg17.dupSpMrna.mrnaID minCheck=0.40
hg17.dupSpMrna.dupMrnaID minCheck=0.20
hg18.ccdsInfo.mrnaAcc chopAfter=. minCheck=0.37
-# hg18.wgEncodeGencodeManualRel2.name
-# hg18.wgEncodeGencodeAutoRel2.name
identifier xenoRefSeqId typeOf=xenoMrnaAccession
"Other Species RefSeq mRNA accession"
$xrg.xenoRefGene.name dupeOk