src/hg/makeDb/trackDb/snp130.html 1.10
1.10 2009/09/28 21:55:55 angie
Added description of repetitive sequence highlighting in re-alignment of flanking sequences.
Index: src/hg/makeDb/trackDb/snp130.html
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/snp130.html,v
retrieving revision 1.9
retrieving revision 1.10
diff -b -B -U 4 -r1.9 -r1.10
--- src/hg/makeDb/trackDb/snp130.html 16 Jul 2009 16:39:23 -0000 1.9
+++ src/hg/makeDb/trackDb/snp130.html 28 Sep 2009 21:55:55 -0000 1.10
@@ -173,8 +173,15 @@
to the neighboring genomic sequence for display on SNP details pages.
While the recomputed alignments may differ from dbSNP's alignments,
they often are informative when UCSC has annotated an unusual condition.
</P>
+<P>
+Non-repetitive genomic sequence is shown in upper case like the flanking
+sequence, and a "|" indicates each match between genomic and flanking bases.
+Repetitive genomic sequence (annotated by RepeatMasker and/or the
+Tandem Repeats Finder with period <= 12) is shown in lower case, and matching
+bases are indicated by a "+".
+</P>
<H2>Data Sources</H2>
<P>
The data that comprise this track were extracted from database dump files