src/hg/gsid/gsidTable/gsidTable.h 1.8

Index: src/hg/gsid/gsidTable/gsidTable.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/gsid/gsidTable/gsidTable.h,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 1000000 -r1.7 -r1.8
--- src/hg/gsid/gsidTable/gsidTable.h	4 Nov 2007 01:51:57 -0000	1.7
+++ src/hg/gsid/gsidTable/gsidTable.h	24 Sep 2009 16:51:44 -0000	1.8
@@ -1,281 +1,281 @@
 /* gsidTable.h - interfaces to plug columns into gsidTable.  The must important
  * thing here is the column structure. */
 
 #ifndef gsidTable_H
 #define gsidTable_H
 
 struct subjInfo
 /* subjInfo - subject info */
     {
     struct subjInfo *next;
     char **fields;       /* array of field values from gsidSubjInfo. fields[0] is always subjId */
     char *sortString;    /* value to use if sorting as a string */
     int sortInteger;     /* value to use if sorting as an integer */
-    int sortDouble;      /* value to use if sorting as an double */
+    double sortDouble;   /* value to use if sorting as an double */
     };
 
 
 struct column
 /* A column in the big table. The central data structure for
  * gsidTable. */
     {
     /* Data set during initialization that is guaranteed to be in each track.  */
     struct column *next;		/* Next column. */
     char *name;			/* Column name, not allocated here. */
     char *shortLabel;		/* Column label. */
     char *longLabel;		/* Column description. */
     float priority;		/* Order displayed. */
     boolean on;			/* True if turned on. */
     boolean defaultOn;		/* On by default? */
     boolean filterOn;		/* True if its filter on. */
     char *type;                 /* type of column */
     struct hash* remap;         /* hash for substitutes if type="remap" */
     char *query;                /* query if not in gsidSubjInfo main table */
     boolean filterDropDown;	/* True if filter uses dropdown list. */
 
     int colNo;                  /* index into subjInfo string array or -1 if not in gsidSubjInfo table */
 
     struct hash *settings;	/* Settings from ra file. */
 
     /* -- Methods -- */
 
     boolean (*exists)(struct column *col, struct sqlConnection *conn);
     /* Return TRUE if column exists in database. */
 
     char *(*cellVal)(struct column *col, struct subjInfo *si,
 	struct sqlConnection *conn);
     /* Get value of one cell as string.  FreeMem this when done.  Note that
     * gp->chrom may be NULL legitimately. */
 
     void (*cellPrint)(struct column *col, struct subjInfo *si,
 	struct sqlConnection *conn);
     /* Print one cell of this column.  Note that gp->chrom may be
     * NULL legitimately. */
 
     void (*labelPrint)(struct column *col);
     /* Print the label in the label row. */
 
     int (*tableColumns)(struct column *col);
     /* How many html columns this uses. */
 
     struct subjInfo *(*advFilter)(struct column *col, struct sqlConnection *conn,
 	struct subjInfo *inputList);
     /* Return list of positions for advanced filter. */
 
     int (*sortCmp)(const void *va, const void *vb);
     /* Compare to sort rows based on value. */
 
     void (*filterControls)(struct column *col, struct sqlConnection *conn);
     /* Print out controls for advanced filter. */
 
 
 
     };
 
 /* ---- global variables ---- */
 
 extern struct cart *cart; /* This holds variables between clicks. */
 extern char *database;	  /* Name of genome database - hg15, or the like. */
 extern char *genome;	  /* Name of organism - mouse, human, etc. */
 extern char *sortOn;	  /* Current sorted by column. */
 extern int displayCount;  /* Number of items to display. */
 
 extern struct hash *columnHash;		  /* Hash of active columns keyed by name. */
 
 /* ---- Cart Variables ---- */
 
 #define dbVarName "db"                  /* Which assembly to use. */
 #define orgVarName "org"                /* Which organism to use. */
 #define orderVarName "gsidTable.order"	/* Sorting column. */
 #define confVarName "gsidTable.do.configure"	/* Configuration button */
 #define advFilterVarName "gsidTable.do.advFilter"      /* Advanced filter */
 #define countVarName "gsidTable_count"	/* How many items to display. */
 #define getSeqHowVarName "gsidTable.getSeqHow" /* How to get sequence. */
 #define getSeqPageVarName "gsidTable.do.getSeqPage" /* Button go to getSequence page. */
 #define getSeqVarName "gsidTable.do.getSeq"  /* Button to get sequence. */
 #define getTextVarName "gsidTable.do.getText"	/* Button to get as text. */
 
 #define advFilterPrefix "gsidTable.as."      
 	/* Prefix for advanced filter variables. */
 #define advFilterPrefixI "gsidTable.asi."
         /* Prefix for advanced filter variables not forcing search. */
 #define advFilterVarName "gsidTable.do.advFilter"      /* Advanced filter */
 #define advFilterClearVarName "gsidTable.do.advFilterClear"
         /* Advanced filter clear all button. */
 #define advFilterListVarName "gsidTable.do.advFilterList"
         /* Advanced filter submit list. */
 
 #define gsidSubjList "gsidTable.gsidSubjList"
 #define gsidSeqList "gsidTable.gsidSeqList"
 
 #define keyWordUploadPrefix "gsidTable.do.keyUp." /* Prefix for keyword uploads. */
 #define keyWordPastePrefix "gsidTable.do.keyPaste." /* Prefix for keyword paste-ins. */
 #define keyWordPastedPrefix "gsidTable.do.keyPasted."
         /* Prefix for keyword paste-ins. */
 #define keyWordClearPrefix "gsidTable.do.keyClear." /* Prefix for keyword paste-ins. */
 
 
 
 
 #define colConfigPrefix "gsidTable.col."
         /* Prefix for stuff set in configuration pages. */
 #define colOrderVar "gsidTable.colOrder"     /* Order of columns. */
 #define defaultConfName "gsidTable.do.colDefault"  /* Restore to default settings. */
 #define hideAllConfName "gsidTable.do.colHideAll"  /* Hide all columns. */
 #define showAllConfName "gsidTable.do.colShowAll"  /* Show all columns. */
 
 #define redirectName "fromProg"  /* cgi to redirect back to. */
 
 
 /* ---- General purpose helper routines. ---- */
 
 void saveSubjList(struct subjInfo *subjList);
 /* save the filtered list of subject gsids to a file for other applications to use */
 
 boolean gotAdvFilter();
 /* Return TRUE if advanced filter variables are set. */
 
 void doAdvFilter(struct sqlConnection *conn, struct column *colList);
 /* Put up advanced filter page. */
 
 void doAdvFilterClear(struct sqlConnection *conn, struct column *colList);
 /* Clear variables in advanced filter page. */
 
 void doAdvFilterList(struct sqlConnection *conn, struct column *colList);
 /* List gene names matching advanced filter. */
 
 struct subjInfo *advFilterResults(struct column *colList,
         struct sqlConnection *conn);
 /* Get list of genes that pass all advanced filter filters.
  * If no filters are on this returns all genes. */
 
 char *advFilterName(struct column *col, char *varName);
 /* Return variable name for advanced filter. */
 
 char *advFilterVal(struct column *col, char *varName);
 /* Return value for advanced filter variable.  Return NULL if it
  * doesn't exist or if it is "" */
 
 char *advFilterNameI(struct column *col, char *varName);
 /* Return name for advanced filter that doesn't force search. */
 
 void advFilterRemakeTextVar(struct column *col, char *varName, int size);
 /* Make a text field of given name and size filling it in with
  * the existing value if any. */
 
 void advFilterAnyAllMenu(struct column *col, char *varName,
         boolean defaultAny);
 /* Make a drop-down menu with value all/any. */
 
 boolean advFilterOrLogic(struct column *col, char *varName,
         boolean defaultOr);
 /* Return TRUE if user has selected 'all' from any/all menu */
 
 
 
 void advFilterKeyUploadButton(struct column *col);
 /* Make a button for uploading keywords. */
 
 struct column *advFilterKeyUploadPressed(struct column *colList);
 /* Return column where an key upload button was pressed, or
  * NULL if none. */
 
 void doAdvFilterKeyUpload(struct sqlConnection *conn, struct column *colList,
     struct column *col);
 /* Handle upload keyword list button press in advanced filter form. */
 
 void advFilterKeyPasteButton(struct column *col);
 /* Make a button for uploading keywords. */
 
 struct column *advFilterKeyPastePressed(struct column *colList);
 /* Return column where an key upload button was pressed, or
  * NULL if none. */
 
 void doAdvFilterKeyPaste(struct sqlConnection *conn, struct column *colList,
     struct column *col);
 /* Handle search keyword list button press in advanced filter form. */
 
 struct column *advFilterKeyPastedPressed(struct column *colList);
 /* Return column where an key upload button was pressed, or
  * NULL if none. */
 
 void doAdvFilterKeyPasted(struct sqlConnection *conn, struct column *colList,
     struct column *col);
 /* Handle search keyword list button press in advanced filter form. */
 
 void advFilterKeyClearButton(struct column *col);
 /* Make a button for uploading keywords. */
 
 struct column *advFilterKeyClearPressed(struct column *colList);
 /* Return column where an key upload button was pressed, or
  * NULL if none. */
 
 void doAdvFilterKeyClear(struct sqlConnection *conn, struct column *colList,
     struct column *col);
 /* Handle clear keyword list button press in advanced filter form. */
 
 void lookupAdvFilterControls(struct column *col, struct sqlConnection *conn);
 /* Print out controls for advanced filter on lookup column. */
 
 void minMaxAdvFilterControls(struct column *col, struct sqlConnection *conn);
 /* Print out controls for min/max advanced filter. */
 
 void dropDownAdvFilterControls(struct column *col, struct sqlConnection *conn);
 /* Print out controls for dropdown list filter. */
 
 struct subjInfo *readAllSubjInfo(struct sqlConnection *conn, struct column *columns);
 /* Get all main table gsidSubjInfo columns in use. */
 
 boolean anyRealInCart(struct cart *cart, char *wild);
 /* Return TRUE if variables are set matching wildcard. */
 
 void controlPanelStart();
 /* Put up start of tables around a control panel. */
 
 void controlPanelEnd();
 /* Put up end of tables around a control panel. */
 
 void hotLinks();
 /* Make top bar */
 
 void makeTitle(char *title, char *helpName);
 /* Make title bar. */
 
 void doConfigure(struct sqlConnection *conn, struct column *colList);
 	//, char *bumpVar);
 /* Configuration page. */
 void doDefaultConfigure(struct sqlConnection *conn, struct column *colList );
 /* Do configuration starting with defaults. */
 
 void doConfigHideAll(struct sqlConnection *conn, struct column *colList);
 /* Respond to hide all button in configuration page. */
 
 void doConfigShowAll(struct sqlConnection *conn, struct column *colList);
 /* Respond to show all button in configuration page. */
 
 void fixSafariSpaceInQuotes(char *s);
 /* Safari on the Mac changes a space (ascii 32) to a
  * ascii 160 if it's inside of a single-quote in a
  * text input box!?  This tuns it back to a 32. */
 
 char *colVarName(struct column *col, char *prefix);
 /* Return variable name prefix.col->name. This is just a static
  * variable, so don't nest these calls. */
 
 
 void colButton(struct column *col, char *prefix, char *label);
 /* Make a button named prefix.col->name with given label. */
 
 struct column *colButtonPressed(struct column *colList, char *prefix);
 /* See if a button named prefix.column is pressed for some
  * column, and if so return the column, else NULL. */
 
 void doGetSeqPage(struct sqlConnection *conn, struct column *colList);
 /* Put up the get sequence page. */
 
 void doGetSeq(struct sqlConnection *conn, struct subjInfo *siList, char *how);
 
 
 
 #endif /* gsidTable_H */