src/hg/lib/bed12wSeq.as 1.1

1.1 2009/09/24 21:26:52 braney
bed12 plus a couple of sequences at the end
Index: src/hg/lib/bed12wSeq.as
===================================================================
RCS file: src/hg/lib/bed12wSeq.as
diff -N src/hg/lib/bed12wSeq.as
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/bed12wSeq.as	24 Sep 2009 21:26:52 -0000	1.1
@@ -0,0 +1,18 @@
+table bed12wSeq
+"Browser extensible data (12 fields) plus two sequences"
+    (
+    string chrom;      "Chromosome (or contig, scaffold, etc.)"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Name of item"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Start of where display should be thick (start codon)"
+    uint thickEnd;     "End of where display should be thick (stop codon)"
+    uint reserved;     "Used as itemRgb as of 2004-11-22"
+    int blockCount;    "Number of blocks"
+    int[blockCount] blockSizes; "Comma separated list of block sizes"
+    int[blockCount] chromStarts; "Start positions relative to chromStart"
+    string seq1;       "sequence 1, normally left paired end"
+    string seq2;       "sequence 2, normally right paired end"
+    )