src/hg/lib/bed12wSeq.as 1.1
1.1 2009/09/24 21:26:52 braney
bed12 plus a couple of sequences at the end
Index: src/hg/lib/bed12wSeq.as
===================================================================
RCS file: src/hg/lib/bed12wSeq.as
diff -N src/hg/lib/bed12wSeq.as
--- /dev/null 1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/bed12wSeq.as 24 Sep 2009 21:26:52 -0000 1.1
@@ -0,0 +1,18 @@
+table bed12wSeq
+"Browser extensible data (12 fields) plus two sequences"
+ (
+ string chrom; "Chromosome (or contig, scaffold, etc.)"
+ uint chromStart; "Start position in chromosome"
+ uint chromEnd; "End position in chromosome"
+ string name; "Name of item"
+ uint score; "Score from 0-1000"
+ char[1] strand; "+ or -"
+ uint thickStart; "Start of where display should be thick (start codon)"
+ uint thickEnd; "End of where display should be thick (stop codon)"
+ uint reserved; "Used as itemRgb as of 2004-11-22"
+ int blockCount; "Number of blocks"
+ int[blockCount] blockSizes; "Comma separated list of block sizes"
+ int[blockCount] chromStarts; "Start positions relative to chromStart"
+ string seq1; "sequence 1, normally left paired end"
+ string seq2; "sequence 2, normally right paired end"
+ )