galt: changes by commit

review to branch (2009-09-22 to 2009-09-29) v216

• making it a little more friendly
  • src/utils/qa/weeklybld/doNewReview.csh 1.15 - lines changed: 4, context: html, text, full: html, text
• happy fiction that preview is really on next branch already
  • src/utils/qa/weeklybld/buildCvsReports.csh 1.24 - lines changed: 1, context: html, text, full: html, text
• oops fixed path problem
  • src/utils/qa/weeklybld/makeUserApps.csh 1.6 - lines changed: 3, context: html, text, full: html, text
• adding DESTDIR
  • src/utils/bigWigInfo/makefile 1.3 - lines changed: 2, context: html, text, full: html, text
• fixing makefiles; getting rid of unnecessary $SOCKETLIB, adding $DESTDIR and removing an unneeded space-char
  • src/utils/bedClip/makefile 1.2 - lines changed: 0, context: html, text, full: html, text
  • src/utils/bedGraphToBigWig/makefile 1.4 - lines changed: 3, context: html, text, full: html, text
  • src/utils/bedToBigBed/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/utils/bigBedSummary/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/utils/bigBedToBed/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/utils/bigWigInfo/makefile 1.4 - lines changed: 0, context: html, text, full: html, text
  • src/utils/bigWigSummary/makefile 1.7 - lines changed: 0, context: html, text, full: html, text
  • src/utils/bigWigToBedGraph/makefile 1.7 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faCount/makefile 1.7 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faFrag/makefile 1.8 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faOneRecord/makefile 1.8 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faRandomize/makefile 1.4 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faSize/makefile 1.8 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faSomeRecords/makefile 1.9 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faToNib/makefile 1.13 - lines changed: 0, context: html, text, full: html, text
  • src/utils/faToTwoBit/makefile 1.15 - lines changed: 0, context: html, text, full: html, text
  • src/utils/htmlCheck/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/utils/nibFrag/makefile 1.10 - lines changed: 0, context: html, text, full: html, text
  • src/utils/textHistogram/makefile 1.15 - lines changed: 0, context: html, text, full: html, text
  • src/utils/twoBitInfo/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/utils/twoBitToFa/makefile 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/utils/wigToBigWig/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
• adding SOCKETLIB back, apparently needed for solaris and other stuff (this is not SSL related)
  • src/utils/bedGraphToBigWig/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/utils/bedToBigBed/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/utils/bigBedSummary/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/utils/bigBedToBed/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/utils/htmlCheck/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/utils/twoBitInfo/makefile 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/utils/twoBitToFa/makefile 1.16 - lines changed: 1, context: html, text, full: html, text
  • src/utils/wigToBigWig/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
• fixing dates to include year
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/list.rhtml 1.23 - lines changed: 3, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml 1.44 - lines changed: 10, context: html, text, full: html, text
• adding missing https
  • src/hg/lib/customPp.c 1.8 - lines changed: 2, context: html, text, full: html, text
• close all extra descriptors to fix fork for mysql5 client
  • src/lib/https.c 1.2 - lines changed: 7, context: html, text, full: html, text
  • src/lib/net.c 1.73 - lines changed: 7, context: html, text, full: html, text
• allowing renames
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb 1.92 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml 1.45 - lines changed: 2, context: html, text, full: html, text
• fix based on mysql5
  • src/hg/utils/automation/synBlastp.csh 1.5 - lines changed: 2, context: html, text, full: html, text
• v216 final build
  • src/utils/qa/weeklybld/buildEnv.csh 1.80 - lines changed: 3, context: html, text, full: html, text
• "New version number v216"
  • src/hg/inc/versionInfo.h 1.156 - lines changed: 1, context: html, text, full: html, text