jsanborn: changes by commit

review to branch (2009-09-22 to 2009-09-29) v216

• initial commit
  • src/hg/tcga/bamBam/bamBam.c 1.1 - lines changed: 253, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.c 1.1 - lines changed: 380, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.h 1.1 - lines changed: 77, context: html, text, full: html, text
  • src/hg/tcga/bamBam/makefile 1.1 - lines changed: 23, context: html, text, full: html, text
  • src/hg/tcga/bamVariants/bamVariants.c 1.1 - lines changed: 379, context: html, text, full: html, text
  • src/hg/tcga/bamVariants/makefile 1.1 - lines changed: 23, context: html, text, full: html, text
• it is alive
  • src/hg/tcga/bamBam/bamBam.c 1.2 - lines changed: 53, context: html, text, full: html, text
• moved stuff around to make it more flexible
  • src/hg/tcga/bamBam/bamBam.c 1.4 - lines changed: 171, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.c 1.3 - lines changed: 167, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.h 1.3 - lines changed: 26, context: html, text, full: html, text
• updated
  • src/hg/tcga/bamBam/bamBam.c 1.5 - lines changed: 139, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bamBam.c 1.3 - lines changed: 145, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.c 1.4 - lines changed: 4, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.c 1.2 - lines changed: 8, context: html, text, full: html, text
  • src/hg/tcga/bamBam/bam_dual_pileup.h 1.2 - lines changed: 33, context: html, text, full: html, text