src/hg/makeDb/trackDb/trackDb.ra 1.529
1.529 2009/09/17 16:23:58 kuhn
converted dbChainNet trackNames to chainNetDb to match pattern we've been using
Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.528
retrieving revision 1.529
diff -b -B -U 4 -r1.528 -r1.529
--- src/hg/makeDb/trackDb/trackDb.ra 16 Sep 2009 20:29:52 -0000 1.528
+++ src/hg/makeDb/trackDb/trackDb.ra 17 Sep 2009 16:23:58 -0000 1.529
@@ -2079,9 +2079,9 @@
spectrum on
type netAlign fr2 chainFr2
otherDb fr2
-track tetNig2ChainNet
+track chainNetTetNig2
compositeTrack on
shortLabel Tetraodon Chain/Net
longLabel Tetraodon (Mar. 2007/tetNig2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2104,16 +2104,17 @@
spectrum on
html chainNet
track chainTetNig2
- subTrack tetNig2ChainNet
+ subTrack chainNetTetNig2
+chainNetTetNig2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain tetNig2
track netTetNig2
- subTrack tetNig2ChainNet
+ subTrack chainNetTetNig2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign tetNig2 chainTetNig2
@@ -2139,9 +2140,9 @@
spectrum on
type netAlign tetNig1 chainTetNig1
otherDb tetNig1
-track danRer6ChainNet
+track chainNetDanRer6
compositeTrack on
shortLabel Zebrafish Chain/Net
longLabel Zebrafish (Dec. 2008/danRer6), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2164,16 +2165,16 @@
spectrum on
html chainNet
track chainDanRer6
- subTrack danRer6ChainNet
+ subTrack chainNetDanRer6
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain danRer6
track netDanRer6
- subTrack danRer6ChainNet
+ subTrack chainNetDanRer6
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign danRer6 chainDanRer6
@@ -2475,9 +2476,9 @@
type netAlign galGal2 chainGalGal2
otherDb galGal2
# release alpha until individual galGal3 tracks are obsolete
-track galGal3ChainNet
+track chainNetGalGal3
compositeTrack on
shortLabel Chicken Chain/Net
longLabel Chicken (May. 2006/galGal3), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2501,16 +2502,16 @@
html chainNet
release alpha
track chainGalGal3
- subTrack galGal3ChainNet
+ subTrack chainNetGalGal3
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain galGal3
track netGalGal3
- subTrack galGal3ChainNet
+ subTrack chainNetGalGal3
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign galGal3 chainGalGal3
@@ -2628,9 +2629,9 @@
otherDb taeGut1
release beta
# release alpha until ornAna1 individual chain/net tracks phased out
-track ornAna1ChainNet
+track chainNetOrnAna1
compositeTrack on
shortLabel Platypus Chain/Net
longLabel Platypus (Mar. 2007/ornAna1), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2654,16 +2655,16 @@
html chainNet
release alpha
track chainOrnAna1
- subTrack ornAna1ChainNet
+ subTrack chainNetOrnAna1
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain ornAna1
track netOrnAna1
- subTrack ornAna1ChainNet
+ subTrack chainNetOrnAna1
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign ornAna1 chainOrnAna1
@@ -2716,9 +2717,9 @@
type netAlign macEug1 chainMacEug1
otherDb macEug1
# release alpha until monDom5 individual chain/net tracks phased out
-track monDom5ChainNet
+track chainNetMonDom5
compositeTrack on
shortLabel Opossum Chain/Net
longLabel Opossum (Oct. 2006/monDom5), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2742,16 +2743,16 @@
html chainNet
release alpha
track chainMonDom5
- subTrack monDom5ChainNet
+ subTrack chainNetMonDom5
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain monDom5
track netMonDom5
- subTrack monDom5ChainNet
+ subTrack chainNetMonDom5
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign monDom5 chainMonDom5
@@ -2960,9 +2961,9 @@
type netAlign mm6 chainMm6
otherDb mm6
# release alpha until mm9 individual chain/net tracks phased out
-track mm9ChainNet
+track chainNetMm9
compositeTrack on
shortLabel Mouse Chain/Net
longLabel Mouse (Jul. 2007/mm9), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -2986,16 +2987,16 @@
html chainNet
release alpha
track chainMm9
- subTrack mm9ChainNet
+ subTrack chainNetMm9
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain mm9
track netMm9
- subTrack mm9ChainNet
+ subTrack chainNetMm9
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign mm9 chainMm9
@@ -3242,9 +3243,9 @@
type netAlign bosTau1 chainBosTau1
otherDb bosTau1
# release alpha until equCab1 phased out
-track equCab2ChainNet
+track chainNetEquCab2
compositeTrack on
shortLabel Horse Chain/Net
longLabel Horse (Sep. 2007/equCab2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -3268,23 +3269,23 @@
html chainNet
release alpha
track chainEquCab2
- subTrack equCab2ChainNet
+ subTrack chainNetEquCab2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain equCab2
track netEquCab2
- subTrack equCab2ChainNet
+ subTrack chainNetEquCab2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign equCab2 chainEquCab2
# release alpha until canFam2 individual tracks phased out
-track canFam2ChainNet
+track chainNetCanFam2
compositeTrack on
shortLabel Dog Chain/Net
longLabel Dog (May 2005/canFam2), Chain and Net Alignments
subGroup1 view Views chain=Chain net=Net
@@ -3308,16 +3309,16 @@
html chainNet
release alpha
track chainCanFam2
- subTrack canFam2ChainNet
+ subTrack chainNetCanFam2
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
type chain canFam2
track netCanFam2
- subTrack canFam2ChainNet
+ subTrack chainNetCanFam2
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFam2 chainCanFam2
@@ -4664,9 +4665,9 @@
searchTable ccdsGene
searchType genePred
searchPriority 1.1
-track venterChainNet
+track chainNetVenter
compositeTrack on
shortLabel Venter Chain/Net
longLabel J. Craig Venter Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
@@ -4682,9 +4683,9 @@
settingsByView chain:spectrum=on
sortOrder view=+
track chainVenter1
- subTrack venterChainNet off
+ subTrack chainNetVenter off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
@@ -4694,9 +4695,9 @@
type chain venter1
otherDb venter1
track netVenter1
- subTrack venterChainNet off
+ subTrack chainNetVenter off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign venter1 chainVenter1
@@ -4738,9 +4739,9 @@
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment net
type netAlign hg19 chainHg19
-track poodleChainNet
+track chainNetPoodle
compositeTrack on
shortLabel Poodle Chain/Net
longLabel Poodle Chain and Net Alignments
subGroup1 view Views chain=Chains net=Nets
@@ -4756,9 +4757,9 @@
settingsByView chain:spectrum=on
sortOrder view=+
track chainCanFamPoodle1
- subTrack poodleChainNet off
+ subTrack chainNetPoodle off
subGroups view=chain
shortLabel $o_Organism Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
color 100,50,0
@@ -4768,9 +4769,9 @@
type chain canFamPoodle1
otherDb canFamPoodle1
track netCanFamPoodle1
- subTrack poodleChainNet off
+ subTrack chainNetPoodle off
subGroups view=net
shortLabel $o_Organism Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
type netAlign canFamPoodle1 chainCanFamPoodle1