src/blat/version.doc 1.74

1.74 2009/10/08 18:09:38 kent
Moving repMatch calculations from blat to library so can be shared with gfServer.

Index: src/blat/version.doc
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/blat/version.doc,v
retrieving revision 1.73
retrieving revision 1.74
diff -b -B -U 4 -r1.73 -r1.74
--- src/blat/version.doc	10 Feb 2009 21:59:11 -0000	1.73
+++ src/blat/version.doc	8 Oct 2009 18:09:38 -0000	1.74
@@ -3,8 +3,10 @@
        overflow when people using more than 4 gig of query sequence.
      o (in 34x2) Fixed -out=blast to use +/- instead of -/+ for non-translated.
      o (in 34x3) Fixed -minScore, filter was not working when over half query-size.
      o (in 34x4) Made it convert u's to t's for RNA sequence stuff.
+     o (in 34x5) Made gfServer calculate repMatch based on stepSize/tileSize combination the way blat does
+       rather than just being good for stepSize 11.
      
 
 34:
      o (in 33x1) Put in check for two bit files with more than 4 gig.