src/hg/archaeStuff/data/Genome-info-mods 1.86
1.86 2009/10/12 06:56:09 pchan
add haloVolc1_1 from Halolex
Index: src/hg/archaeStuff/data/Genome-info-mods
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/archaeStuff/data/Genome-info-mods,v
retrieving revision 1.85
retrieving revision 1.86
diff -b -B -U 4 -r1.85 -r1.86
--- src/hg/archaeStuff/data/Genome-info-mods 1 Oct 2009 22:42:37 -0000 1.85
+++ src/hg/archaeStuff/data/Genome-info-mods 12 Oct 2009 06:56:09 -0000 1.86
@@ -150,8 +150,41 @@
Trna_opt: -o# -f# -m# -F# -HyA
Trna_abr: Halo_volc-tRNAs
Prot_seq: /projects/lowelab/db/genomes/Other-genomes/Haloferax_volcanii_DS2/Hvol-genome-prot.fa
+Org_abr: Halo_volc_DS2_1_1
+Org_name: Haloferax volcanii DS2
+Menu_name: Haloferax volcanii
+Domain: Archaea
+DB_name: haloVolc1_1
+Iso_pub: 1190944
+DB_src: TIGR
+Tax_name: Haloferax volcanii DS2
+BLAT_IDs: 61023 61023
+Tax_ID: 309800: Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloferax.
+TIGR_ID: 0
+Dom_ct: &Halo_volc_DS2
+Gen_ID: 0
+SP_ID: HALVO HALSQ HALSA HALWD HALMA HALSP NATPD
+Seq_acc: Hvo-091001-genome chr pHV4 pHV3 pHV1 pHV2
+Name_chg: chr pHV4 pHV3 pHV1 pHV2
+Seq_size: 2847757 635786 437906 85092 6359
+Seq_GC: 66.64 61.67 65.56 55.5 56.06
+Gene_ct: 4135
+Gb_acc: None
+Multiz: HalophilesPriv haloWals1 natrPhar1 natrMaga0 haloHalo1 haloSali1 halMar1 haloUtah1
+Public_multiz: Halophiles haloWals1 natrPhar1 haloHalo1 haloSali1 halMar1 haloUtah1
+Phylo: ((((((haloHalo1,haloSali1),haloUtah1),natrMaga0),natrPhar1),halMar1),(haloWals1,haloVolc1_1))
+Pub_id:
+Rel_date: 1 Oct 2009
+Seq_src: Halolex
+Sp_info: The genome is complete and being publicly released by Jonathan Eisen before journal publication while genome annotation is provided through Halolex. <I>H. volcanii</I> is a chemoorganotroph requiring complex nutrient medium and 1.5-2.5 M NaCl for growth. Cultures will grow at 37C, but optimal growth is at 42C.
+Web_seq:
+Web_db:
+Trna_opt: -o# -f# -m# -F# -HyA
+Trna_abr: Halo_volc-tRNAs
+Prot_seq: /projects/lowelab/db/genomes/Other-genomes/Haloferax_volcanii_DS2/Hvol-genome-prot.fa
+
Org_abr: Halo_utah_DSM_12940
DB_name: haloUtah1
Name_chg: chr
Iso_pub: 10826803