kate: changes by file

review to branch (2009-10-06 to 2009-10-13) v217

• src/hg/encode/DAFs/UMassTfbsAll.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Add new required setting
• src/hg/encode/DAFs/UMassTfbsValid.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    Add new required setting
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.200 lines changed: 7, context: html, text, full: html, text
    Add color by cell type (from cv.ra) to trackDb file
  • 1.199 lines changed: 3, context: html, text, full: html, text
    Allow metadata extraction w/o requiring file validation settings, for backwards compatibility
  • 1.197 lines changed: 5, context: html, text, full: html, text
    Add support for specifying track group in DAF
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.21 lines changed: 5, context: html, text, full: html, text
    Add support for specifying track group in DAF
• src/hg/encode/encodeValidate/config/labs.ra
  • 1.9 lines changed: 2, context: html, text, full: html, text
    Replace Andy's entries
• src/hg/encode/encodeValidate/test/makefile
  • 1.24 lines changed: 7, context: html, text, full: html, text
    Update chipseq tests for latest DAF & label conventions. Assure they fail if expected files differ. Disable methylseq test for now.
• src/hg/encode/encodeValidate/test/expected/chipseq/README.txt
  • 1.5 lines changed: 9, context: html, text, full: html, text
    Add testing of color by cell type from cv.ra
  • 1.4 lines changed: 6, context: html, text, full: html, text
    Change name of chipseq test so it differs from real track so it can test out composite trackDb output
• src/hg/encode/encodeValidate/test/expected/chipseq/load.ra
  • 1.6 lines changed: 10, context: html, text, full: html, text
    Add testing of color by cell type from cv.ra
  • 1.5 lines changed: 5, context: html, text, full: html, text
    Change name of chipseq test so it differs from real track so it can test out composite trackDb output
• src/hg/encode/encodeValidate/test/expected/chipseq/trackDb.ra
  • 1.8 lines changed: 21, context: html, text, full: html, text
    Add testing of color by cell type from cv.ra
  • 1.7 lines changed: 28, context: html, text, full: html, text
    Change name of chipseq test so it differs from real track so it can test out composite trackDb output
  • 1.6 lines changed: 30, context: html, text, full: html, text
    Update chipseq tests for latest DAF & label conventions. Assure they fail if expected files differ. Disable methylseq test for now.
• src/hg/encode/encodeValidate/test/input/chipseq/StanfordChip-Test-Jun08.DDF
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Add testing of color by cell type from cv.ra
• src/hg/encode/encodeValidate/test/input/chipseq/StanfordChip.DAF
  • 1.8 lines changed: 2, context: html, text, full: html, text
    Change name of chipseq test so it differs from real track so it can test out composite trackDb output
  • 1.7 lines changed: 1, context: html, text, full: html, text
    Update chipseq tests for latest DAF & label conventions. Assure they fail if expected files differ. Disable methylseq test for now.