kuhn: changes by commit

review to branch (2009-10-06 to 2009-10-13) v217

• changed hg18 chainnets to o_db and set priorities of hg18 and hg19 chainnets
  • src/hg/makeDb/trackDb/platypus/trackDb.ra 1.4 - lines changed: 13, context: html, text, full: html, text
• moved priority.ra into trackDb.ra, adjusted priority on chainNetHg19 and set shortLabel on hg18 chainnet tracks to o_db
  • src/hg/makeDb/trackDb/lizard/priority.ra 1.2 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/trackDb.ra 1.4 - lines changed: 15, context: html, text, full: html, text
• set shortLabel on hg18 chainnet tracks to o_db
  • src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.39 - lines changed: 4, context: html, text, full: html, text
• set shortLabel on hg18 chainnet tracks to o_db and set priority of chainNetHg19
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.59 - lines changed: 5, context: html, text, full: html, text
• set shortLabel on hg18 chainnet tracks to o_db, set priority of chainNetHg19 and some fish and moved some items from priority.ra
  • src/hg/makeDb/trackDb/medaka/priority.ra 1.3 - lines changed: 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.ra 1.15 - lines changed: 21, context: html, text, full: html, text
• added table lists for knownGene.csh script to use and removed some names from existing kgTables list
  • src/utils/qa/gsTables 1.1 - lines changed: 97, context: html, text, full: html, text
  • src/utils/qa/kgTables 1.3 - lines changed: 20, context: html, text, full: html, text
  • src/utils/qa/makefile 1.115 - lines changed: 2, context: html, text, full: html, text
  • src/utils/qa/pbTables 1.1 - lines changed: 14, context: html, text, full: html, text
• updated to work with new KG. still needs work
  • src/utils/qa/knownGene.csh 1.13 - lines changed: 71, context: html, text, full: html, text
• checked in script to get list of KG tables for current assembly from master list
  • src/utils/qa/findKgTableSet.csh 1.1 - lines changed: 64, context: html, text, full: html, text
  • src/utils/qa/makefile 1.116 - lines changed: 1, context: html, text, full: html, text
• adjusted priorities and set chainnets for equCab1 to o_db
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.37 - lines changed: 16, context: html, text, full: html, text
• moved chainnets for canFam2 from priority.ra to trackDb.ra (override)
  • src/hg/makeDb/trackDb/horse/priority.ra 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.4 - lines changed: 13, context: html, text, full: html, text
• adjusted priority for human and dog chainnets
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.5 - lines changed: 8, context: html, text, full: html, text
• added chain info for dog chain and adjusted priority for mousr chainnets
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.6 - lines changed: 10, context: html, text, full: html, text