src/hg/instinct/bioInt2/bioPathwayLevel.c 1.7

Index: src/hg/instinct/bioInt2/bioPathwayLevel.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/bioInt2/bioPathwayLevel.c,v
retrieving revision 1.6
retrieving revision 1.7
diff -b -B -U 4 -r1.6 -r1.7
--- src/hg/instinct/bioInt2/bioPathwayLevel.c	21 Sep 2009 16:57:04 -0000	1.6
+++ src/hg/instinct/bioInt2/bioPathwayLevel.c	30 Sep 2009 22:29:40 -0000	1.7
@@ -210,9 +210,9 @@
 			
 			struct analysisVals *av = el->val;
 			double val = av->conf;
 			
-			char *type;
+			//char *type;
 			if (sameString(th->type, "Expression"))
 				fprintf(mrnaF, "\t%f", val);
 			else if (sameString(th->type, "CNV"))
 				fprintf(genomeF, "\t%f", val);
@@ -344,9 +344,10 @@
 fprintf(stdout, "starting pathway analysis.\n");
 
 struct hash *featureHash = createIdHash(biConn, AF_TABLE, "feature_name");
 
-struct slPair *pa, *sp;
+//struct slPair *pa, *sp;
+struct slPair *pa;
 
 int count = 0, numPathways = slCount(spPathways);
 
 struct pathwayVals *pvList = NULL;