src/hg/makeDb/doc/hg19.txt 1.48
1.48 2009/10/16 17:17:44 kent
Fixed glitch in knownToHprd table build instructions.
Index: src/hg/makeDb/doc/hg19.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg19.txt,v
retrieving revision 1.47
retrieving revision 1.48
diff -b -B -U 4 -r1.47 -r1.48
--- src/hg/makeDb/doc/hg19.txt 15 Oct 2009 22:36:03 -0000 1.47
+++ src/hg/makeDb/doc/hg19.txt 16 Oct 2009 17:17:44 -0000 1.48
@@ -6599,9 +6599,9 @@
hgsql hg19 -e 'load data local infile "hprdToUniProt.tab" into table hprdToUniProt'
# build knownToHprd table
- hgsql hg19 -N -e 'select kgId,hprdId from hprdToCdna, kgXref where cdnaId=kgId' >j.kg1
+ hgsql hg19 -N -e 'select kgId,hprdId from hprdToCdna, kgXref where cdnaId=refseq' >j.kg1
hgsql hg19 -N -e 'select kgId,hprdId from hprdToUniProt, kgXref where uniProtId=spId' >j.kg2
cat j.kg1 j.kg2 | sed 's/_.//' | sort -u >knownToHprd.tab
wc knownToHprd.tab