src/hg/near/hprdXmlToTab/out.tree 1.1
1.1 2009/10/15 21:58:38 kent
Utility to convert HPRD interaction html file to tab-separated list of protein/protein interactions seems to work. This is based on an autoXml parser and a snippet of code Galt wrote that now lives in hprdXmlToTab.c.
Index: src/hg/near/hprdXmlToTab/out.tree
===================================================================
RCS file: src/hg/near/hprdXmlToTab/out.tree
diff -N src/hg/near/hprdXmlToTab/out.tree
--- /dev/null 1 Jan 1970 00:00:00 -0000
+++ src/hg/near/hprdXmlToTab/out.tree 15 Oct 2009 21:58:38 -0000 1.1
@@ -0,0 +1,71 @@
+entrySet
+ entry
+ source
+ names
+ shortLabel
+ fullName?
+ alias*
+ bibref
+ xref
+ primaryRef
+ secondaryRef*
+ availabilityList
+ availability
+ experimentList
+ experimentDescription*
+ bibref
+ xref
+ primaryRef
+ secondaryRef*
+ interactionDetectionMethod
+ names
+ shortLabel
+ fullName?
+ alias*
+ xref
+ primaryRef
+ secondaryRef*
+ experimentRef*
+ interactorList
+ interactor+
+ names
+ shortLabel
+ fullName?
+ alias*
+ xref
+ primaryRef
+ secondaryRef*
+ interactorType
+ names
+ shortLabel
+ fullName?
+ alias*
+ xref
+ primaryRef
+ secondaryRef*
+ organism
+ names
+ shortLabel
+ fullName?
+ alias*
+ sequence
+ interactionList
+ interaction+
+ experimentList
+ experimentDescription*
+ bibref
+ xref
+ primaryRef
+ secondaryRef*
+ interactionDetectionMethod
+ names
+ shortLabel
+ fullName?
+ alias*
+ xref
+ primaryRef
+ secondaryRef*
+ experimentRef*
+ participantList
+ participant+
+ interactorRef