hiram: changes by file

branch to review (2009-10-13 to 2009-10-20) v218

• src/makefile
  • 1.68 lines changed: 3, context: html, text, full: html, text
    adding stringify encode/validateFiles ratStuff/mafsInRegion and pslCDnaFilter to the userApps build
  • 1.67 lines changed: 1, context: html, text, full: html, text
    liftOver out of place on lists, there were duplicates
  • 1.66 lines changed: 4, context: html, text, full: html, text
    fixup the userApps list of build items
• src/hg/encode/validateFiles/makefile
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Must use DESTDIR with BINDIR to be sane
• src/hg/makeDb/trackDb/elephant/loxAfr3/gold.html
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Add note about chrM being type F finished
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.54 lines changed: 3, context: html, text, full: html, text
    Now with frames, irows and phastCons46way all bigWig
• src/hg/pslCDnaFilter/makefile
  • 1.13 lines changed: 1, context: html, text, full: html, text
    binary result to DESTDIR
• src/hg/ratStuff/mafsInRegion/makefile
  • 1.4 lines changed: 5, context: html, text, full: html, text
    result properly honoring DESTDIR
• src/inc/common.mk
  • 1.72 lines changed: 1, context: html, text, full: html, text
    STRINGIFY needs to look in DESTDIR
• src/utils/bedClip/makefile
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Properly create the destination directory before making a binary there
• src/utils/stringify/makefile
  • 1.11 lines changed: 2, context: html, text, full: html, text
    Properly send output to DESTDIR BINDIR