src/hg/inc/arCOGs.h 1.1

Index: src/hg/inc/arCOGs.h
===================================================================
RCS file: src/hg/inc/arCOGs.h
diff -N src/hg/inc/arCOGs.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/arCOGs.h	14 Oct 2009 20:28:27 -0000	1.1
@@ -0,0 +1,67 @@
+/* arCOGs.h was originally generated by the autoSql program, which also 
+ * generated arCOGs.c and arCOGs.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef ARCOGS_H
+#define ARCOGS_H
+
+#define ARCOGS_NUM_COLS 7
+
+struct arCOGs
+/* arCOG Information */
+    {
+    struct arCOGs *next;  /* Next in singly linked list. */
+    char *chrom;	/* chromosome */
+    unsigned chromStart;	/* Start position in chromosome */
+    unsigned chromEnd;	/* End position in chromosome */
+    char *name;	/* hit name */
+    unsigned score;	/* Score from 900-1000.  1000 is best */
+    char strand[2];	/* Value should be + or - */
+    char *gene;	/* standard name */
+    };
+
+void arCOGsStaticLoad(char **row, struct arCOGs *ret);
+/* Load a row from arCOGs table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct arCOGs *arCOGsLoad(char **row);
+/* Load a arCOGs from row fetched with select * from arCOGs
+ * from database.  Dispose of this with arCOGsFree(). */
+
+struct arCOGs *arCOGsLoadAll(char *fileName);
+/* Load all arCOGs from whitespace-separated file.
+ * Dispose of this with arCOGsFreeList(). */
+
+struct arCOGs *arCOGsLoadAllByChar(char *fileName, char chopper);
+/* Load all arCOGs from chopper separated file.
+ * Dispose of this with arCOGsFreeList(). */
+
+#define arCOGsLoadAllByTab(a) arCOGsLoadAllByChar(a, '\t');
+/* Load all arCOGs from tab separated file.
+ * Dispose of this with arCOGsFreeList(). */
+
+struct arCOGs *arCOGsCommaIn(char **pS, struct arCOGs *ret);
+/* Create a arCOGs out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new arCOGs */
+
+void arCOGsFree(struct arCOGs **pEl);
+/* Free a single dynamically allocated arCOGs such as created
+ * with arCOGsLoad(). */
+
+void arCOGsFreeList(struct arCOGs **pList);
+/* Free a list of dynamically allocated arCOGs's */
+
+void arCOGsOutput(struct arCOGs *el, FILE *f, char sep, char lastSep);
+/* Print out arCOGs.  Separate fields with sep. Follow last field with lastSep. */
+
+#define arCOGsTabOut(el,f) arCOGsOutput(el,f,'\t','\n');
+/* Print out arCOGs as a line in a tab-separated file. */
+
+#define arCOGsCommaOut(el,f) arCOGsOutput(el,f,',',',');
+/* Print out arCOGs as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* ARCOGS_H */
+