pchan: changes by commit

branch to review (2009-10-13 to 2009-10-20) v218

• Update self blastz track
  • src/hg/makeDb/trackDb/lowelab/haloVolc1_1/trackDb.ra 1.5 - lines changed: 14, context: html, text, full: html, text
• Update ultraConserved track
  • src/hg/makeDb/trackDb/lowelab/haloVolc1_1/trackDb.ra 1.6 - lines changed: 10, context: html, text, full: html, text
• New ultraConserved track
  • src/hg/makeDb/trackDb/lowelab/haloVolc1_1/ultraConserved.html 1.1 - lines changed: 3, context: html, text, full: html, text
• remove snoRNA hits from alignInfo for public browser
  • src/hg/archaeStuff/scripts/archaeBrowser/RemovePriv.pm 1.3 - lines changed: 7, context: html, text, full: html, text
• add public_phylo support to multiz
  • src/hg/archaeStuff/scripts/archaeBrowser/GenomeInfo.pm 1.16 - lines changed: 7, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/MultiAlignment.pm 1.10 - lines changed: 4, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/Organism.pm 1.10 - lines changed: 8, context: html, text, full: html, text
• read annotRev cds.gp instead of genePred.tab if available for igenics and alignInfo
  • src/hg/archaeStuff/scripts/archaeBrowser/AlignmentCompare.pm 1.5 - lines changed: 65, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/CDS.pm 1.21 - lines changed: 4, context: html, text, full: html, text
• add Public_phylo for halophiles
  • src/hg/archaeStuff/data/Genome-info-mods 1.87 - lines changed: 21, context: html, text, full: html, text
• fix blat port for haloVolc1_1
  • src/hg/archaeStuff/data/Genome-info-mods 1.88 - lines changed: 1, context: html, text, full: html, text
• add haloferax private tracks
  • src/hg/makeDb/trackDb/lowelab/privateTracks.ra 1.21 - lines changed: 12, context: html, text, full: html, text
• Details page for multiz track
  • src/hg/makeDb/trackDb/lowelab/haloVolc1_1/multizHalophiles.html 1.1 - lines changed: 161, context: html, text, full: html, text
• change blat port id again
  • src/hg/archaeStuff/data/Genome-info-mods 1.89 - lines changed: 1, context: html, text, full: html, text
• add support to annotRev tracks; use annotRev instead of genepred if available for blastp tracks detail page
  • src/hg/hgc/lowelab.c 1.38 - lines changed: 101, context: html, text, full: html, text
• change to use Hvo-genome.fa for haloVolc1_1
  • src/hg/archaeStuff/data/Genome-info-mods 1.90 - lines changed: 1, context: html, text, full: html, text
• add ynpyoung browser and nympLake_PGA2009 metagenome
  • src/hg/archaeStuff/data/private-genomes.tab 1.4 - lines changed: 25, context: html, text, full: html, text
• add restricted tracks to ynpyoung browser
  • src/hg/makeDb/trackDb/lowelab/privateTracks.ra 1.22 - lines changed: 8, context: html, text, full: html, text
• add schiPomb1 as private genome
  • src/hg/archaeStuff/data/private-genomes.tab 1.5 - lines changed: 5, context: html, text, full: html, text
• replace spaces with tab
  • src/hg/archaeStuff/data/private-genomes.tab 1.6 - lines changed: 2, context: html, text, full: html, text
• Update multiz track
  • src/hg/makeDb/trackDb/lowelab/halMar1/trackDb.ra 1.19 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloHalo1/trackDb.ra 1.23 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloSali1/trackDb.ra 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloUtah1/trackDb.ra 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloUtah1/trackDb.ra 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloVolc1_1/trackDb.ra 1.7 - lines changed: 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloWals1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/natrPhar1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrAby1/trackDb.ra 1.20 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrFur2/trackDb.ra 1.32 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrHor1/trackDb.ra 1.21 - lines changed: 1, context: html, text, full: html, text
• add Name_chg to haloSali1
  • src/hg/archaeStuff/data/Genome-info-mods 1.91 - lines changed: 16, context: html, text, full: html, text