tdreszer: changes by file

branch to review (2009-10-13 to 2009-10-20) v218

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.137 lines changed: 14, context: html, text, full: html, text
    Don't you know I am just trying to up my total modified lines in cvs-reports.
  • 1.136 lines changed: 20, context: html, text, full: html, text
    Type HA-E2F1 not H1-E2F1
  • 1.135 lines changed: 4, context: html, text, full: html, text
    Altered E2F1 to HA-E2F1 at Farnham's request
• src/hg/js/hui.js
  • 1.38 lines changed: 459, context: html, text, full: html, text
    Major changes to support the matrix 3-way CBs. Also some cleanup of old code.
• src/hg/lib/hui.c
  • 1.241 lines changed: 44, context: html, text, full: html, text
    Changes to support the matrix 3-way CBs. Requires hui.js to be uptodate as well.
• src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt
  • 1.7 lines changed: 390, context: html, text, full: html, text
    Getting things ready for Release2
  • 1.6 lines changed: 48, context: html, text, full: html, text
    Keeping up to date
• src/hg/makeDb/doc/encodeDccHg18/broadChipSeq.notes.txt
  • 1.4 lines changed: 304, context: html, text, full: html, text
    Minor edits - no change of table/file lists
  • 1.2 lines changed: 5, context: html, text, full: html, text
    Minor edit
• src/hg/makeDb/doc/encodeDccHg18/dukeUtaUncCrawford.txt
  • 1.8 lines changed: 438, context: html, text, full: html, text
    Keeping up to date
• src/hg/makeDb/doc/encodeDccHg18/uwStam.txt
  • 1.2 lines changed: 102, context: html, text, full: html, text
    Keeping up to date
• src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt
  • 1.9 lines changed: 74, context: html, text, full: html, text
    Release 2 is out the door.
  • 1.8 lines changed: 692, context: html, text, full: html, text
    Keeping up to date
• src/hg/makeDb/doc/encodeDccHg18/yaleUpdate9-30.notes.txt
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Removed 3 tables erroneously listed as new. Thanks Ann
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.421 lines changed: 1, context: html, text, full: html, text
    Added dimensionZchecked for supporting the new 3-way dimension checkboxes
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.595 lines changed: 10, context: html, text, full: html, text
    Added dimensionZchecked for supporting the new 3-way dimension checkboxes
  • 1.592 lines changed: 6, context: html, text, full: html, text
    bedGraph 4 cannot handle viewLimits on same line
  • 1.591 lines changed: 4, context: html, text, full: html, text
    Changed UwDGF signals settings as per Stam lab.
  • 1.590 lines changed: 5, context: html, text, full: html, text
    Fixed Broad metadata, 5 cases of H3K04me1 which should have been H3K4me1
  • 1.588 lines changed: 1, context: html, text, full: html, text
    Metatdata typo
  • 1.587 lines changed: 14, context: html, text, full: html, text
    No sooner is Yale publicly released than errors are found that need correction. HA to HA-E2F1 and make GM12989 and K562 tracks on by default
  • 1.586 lines changed: 87, context: html, text, full: html, text
    Added one last submission for Terry. Fixed some DNCT view limits and colors
  • 1.585 lines changed: 193, context: html, text, full: html, text
    Cleaned up commented out and replaced tracks
  • 1.577 lines changed: 300, context: html, text, full: html, text
    Nine more UwChIP submissions
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadChipSeq.html
  • 1.19 lines changed: 32, context: html, text, full: html, text
    Cleaned up the release notes a little and removed references to Raw Signals
  • 1.15 lines changed: 1, context: html, text, full: html, text
    Changed Broad link by request of Charles Epstein
• src/inc/common.h
  • 1.156 lines changed: 4, context: html, text, full: html, text
    Added dyStringCreate which will create a new dyString from printf style content.
• src/inc/dystring.h
  • 1.19 lines changed: 3, context: html, text, full: html, text
    Added dyStringCreate which will create a new dyString from printf style content.
• src/lib/cheapcgi.c
  • 1.125 lines changed: 1, context: html, text, full: html, text
    Added halfVis class to support 3-way matrix CBs
• src/lib/common.c
  • 1.134 lines changed: 33, context: html, text, full: html, text
    Added findWordByDemiliter which allows searching a string for a word, but the word must be set off by a delimiter.
• src/lib/dystring.c
  • 1.24 lines changed: 12, context: html, text, full: html, text
    Added dyStringCreate which will create a new dyString from printf style content.