src/hg/makeDb/doc/hg19.txt 1.59
1.59 2009/11/09 19:06:29 hartera
Added extra line in seg dupes track documentation.
Index: src/hg/makeDb/doc/hg19.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg19.txt,v
retrieving revision 1.58
retrieving revision 1.59
diff -b -B -U 4 -r1.58 -r1.59
--- src/hg/makeDb/doc/hg19.txt 7 Nov 2009 17:41:04 -0000 1.58
+++ src/hg/makeDb/doc/hg19.txt 9 Nov 2009 19:06:29 -0000 1.59
@@ -7897,8 +7897,9 @@
# Fix incorrect chromosomes in data.
# The script, runCheckTableCoordsDayOld, found this error in the table:
# hg19.genomicSuperDups has 28 records with chrom not described in
# chromInfo.
+ cd /hive/data/genomes/hg19/bed/genomicSuperDup
awk '{print $1}' hg19genomicSuperDups | sort | uniq > chroms
awk '{print $7}' hg19genomicSuperDups | sort | uniq > otherChroms
# Found several cases where the last letter of random is missed off
# for the random contigs. These are not concatenated into a random chrom