src/hg/makeDb/trackDb/genomicSuperDups.html 1.14

Index: src/hg/makeDb/trackDb/genomicSuperDups.html
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/genomicSuperDups.html,v
retrieving revision 1.13
retrieving revision 1.14
diff -b -B -U 4 -r1.13 -r1.14
--- src/hg/makeDb/trackDb/genomicSuperDups.html	10 Dec 2007 20:04:13 -0000	1.13
+++ src/hg/makeDb/trackDb/genomicSuperDups.html	5 Nov 2009 00:44:50 -0000	1.14
@@ -30,21 +30,32 @@
 sequence ("fuguization") and searching all sequence for similarity.  The 
 repeats were then reinserted into the pairwise alignments, the ends of 
 alignments trimmed, and global alignments were generated.
 For a full description of the "fuguization" detection method, see Bailey 
-<em>et al.</em> (2001) in the References section below.
+<em>et al.</em> (2001) in the References section below. This method has become 
+known as WGAC (whole-genome assembly comparison); for example, see Bailey 
+<em>et al.</em> (2002).
 
 <H2>Credits</H2>
 <P>
 These data were provided by 
 <A HREF="mailto:&#120;w&#115;&#64;&#103;&#115;.w&#97;&#115;&#104;&#105;&#110;&#103;&#116;&#111;&#110;.ed&#117;">Ginger Cheng</A>, 
-<A HREF="mailto:&#120;w&#115;&#64;&#103;&#115;.w&#97;&#115;&#104;&#105;&#110;&#103;&#116;&#111;&#110;.ed&#117;">Xinwei She</A> 
-and <A HREF="mailto:&#101;&#101;e&#64;&#103;s.&#119;&#97;&#115;&#104;&#105;&#110;&#103;&#116;&#111;n.&#101;&#100;&#117;">Evan Eichler</A> 
+<A HREF="mailto:&#120;w&#115;&#64;&#103;&#115;.w&#97;&#115;&#104;&#105;&#110;&#103;&#116;&#111;&#110;.ed&#117;">Xinwei She</A>, 
+<A HREF="mailto:&#116;&#105;&#110;l&#111;&#117;&#105;&#101;&#64;&#117;.
+&#119;a&#115;&#104;&#105;&#110;&#103;&#116;&#111;&#110;.
+ed&#117;">Tin Louie</A> and
+<A HREF="mailto:&#101;&#101;e&#64;&#103;s.&#119;&#97;&#115;&#104;&#105;&#110;&#103;&#116;&#111;n.&#101;&#100;&#117;">Evan Eichler</A> 
 at the <A HREF="http://eichlerlab.gs.washington.edu/" 
 TARGET=_BLANK>University of Washington</A>. </P>
 
 <H2>References</H2>
 <P>
+Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, 
+Myers EW, Li PW, Eichler EE.
+<A HREF="http://www.ncbi.nlm.nih.gov/pubmed/12169732?dopt=Abstract" 
+TARGET=_BLANK>Recent segmental duplications in the human genome</A>.
+<em>Science.</em> 2002 Aug 9;297(5583):1003-7.</P>
+<P>
 Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.
 <A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11381028&dopt=Abstract" 
 TARGET=_blank>Segmental duplications: organization and impact within the 
 current human genome project assembly</A>.