src/hg/tcga/bamBam/bamBamCNV.c 1.2

Index: src/hg/tcga/bamBam/bamBamCNV.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/tcga/bamBam/bamBamCNV.c,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/hg/tcga/bamBam/bamBamCNV.c	6 Nov 2009 20:27:29 -0000	1.1
+++ src/hg/tcga/bamBam/bamBamCNV.c	6 Nov 2009 20:29:26 -0000	1.2
@@ -176,17 +176,12 @@
 analysis_params_t *ap = (analysis_params_t*)d->func_data;
 
 if (calc_cnv(d, ap))
     {
-    //int32_t start = min(ap->lstart, ap->rstart);
-    //int32_t stop = max(ap->lstop, ap->rstop);
-    //int32_t len  = (stop - start) + 1;
-	
     printf("%s\t%d\t%d\t%d\t%d\t%d\t%d\n", 
 	   d->hL->target_name[ap->tid], 
-	   ap->lstart, ap->lstop + 1, 
-	   ap->rstart, ap->rstop + 1, 
-	   ap->lcounts, ap->rcounts);
+	   ap->lstart, ap->lstop + 1, ap->lcounts,
+	   ap->rstart, ap->rstop + 1, ap->rcounts);
 
     fflush(stdout);
 
     ap->prevTid   = ap->tid;