src/hg/inc/megablastInfo.h 1.1

Index: src/hg/inc/megablastInfo.h
===================================================================
RCS file: src/hg/inc/megablastInfo.h
diff -N src/hg/inc/megablastInfo.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/megablastInfo.h	9 Nov 2009 22:24:55 -0000	1.1
@@ -0,0 +1,70 @@
+/* megablastInfo.h was originally generated by the autoSql program, which also 
+ * generated megablastInfo.c and megablastInfo.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef MEGABLASTINFO_H
+#define MEGABLASTINFO_H
+
+#define MEGABLASTINFO_NUM_COLS 10
+
+struct megablastInfo
+/* Conserved Domain Description */
+    {
+    struct megablastInfo *next;  /* Next in singly linked list. */
+    char *chrom;	/* chromosome */
+    unsigned chromStart;	/* Start position in chromosome */
+    unsigned chromEnd;	/* End position in chromosome */
+    char *name;	/* hit name */
+    unsigned score;	/* Score from 900-1000.  1000 is best */
+    char strand[2];	/* Value should be + or - */
+    double evalue;	/* Expect value */
+    unsigned percentident;	/* Data source */
+    char *fullname;	/* hit name */
+    unsigned taxid;	/* Data source */
+    };
+
+void megablastInfoStaticLoad(char **row, struct megablastInfo *ret);
+/* Load a row from megablastInfo table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct megablastInfo *megablastInfoLoad(char **row);
+/* Load a megablastInfo from row fetched with select * from megablastInfo
+ * from database.  Dispose of this with megablastInfoFree(). */
+
+struct megablastInfo *megablastInfoLoadAll(char *fileName);
+/* Load all megablastInfo from whitespace-separated file.
+ * Dispose of this with megablastInfoFreeList(). */
+
+struct megablastInfo *megablastInfoLoadAllByChar(char *fileName, char chopper);
+/* Load all megablastInfo from chopper separated file.
+ * Dispose of this with megablastInfoFreeList(). */
+
+#define megablastInfoLoadAllByTab(a) megablastInfoLoadAllByChar(a, '\t');
+/* Load all megablastInfo from tab separated file.
+ * Dispose of this with megablastInfoFreeList(). */
+
+struct megablastInfo *megablastInfoCommaIn(char **pS, struct megablastInfo *ret);
+/* Create a megablastInfo out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new megablastInfo */
+
+void megablastInfoFree(struct megablastInfo **pEl);
+/* Free a single dynamically allocated megablastInfo such as created
+ * with megablastInfoLoad(). */
+
+void megablastInfoFreeList(struct megablastInfo **pList);
+/* Free a list of dynamically allocated megablastInfo's */
+
+void megablastInfoOutput(struct megablastInfo *el, FILE *f, char sep, char lastSep);
+/* Print out megablastInfo.  Separate fields with sep. Follow last field with lastSep. */
+
+#define megablastInfoTabOut(el,f) megablastInfoOutput(el,f,'\t','\n');
+/* Print out megablastInfo as a line in a tab-separated file. */
+
+#define megablastInfoCommaOut(el,f) megablastInfoOutput(el,f,',',',');
+/* Print out megablastInfo as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* MEGABLASTINFO_H */
+