src/hg/lib/megablastInfo.c 1.1

Index: src/hg/lib/megablastInfo.c
===================================================================
RCS file: src/hg/lib/megablastInfo.c
diff -N src/hg/lib/megablastInfo.c
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/megablastInfo.c	9 Nov 2009 22:24:31 -0000	1.1
@@ -0,0 +1,169 @@
+/* megablastInfo.c was originally generated by the autoSql program, which also 
+ * generated megablastInfo.h and megablastInfo.sql.  This module links the database and
+ * the RAM representation of objects. */
+
+#include "common.h"
+#include "linefile.h"
+#include "dystring.h"
+#include "jksql.h"
+#include "megablastInfo.h"
+
+static char const rcsid[] = "$Id$";
+
+void megablastInfoStaticLoad(char **row, struct megablastInfo *ret)
+/* Load a row from megablastInfo table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+{
+
+ret->chrom = row[0];
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = row[3];
+ret->score = sqlUnsigned(row[4]);
+safecpy(ret->strand, sizeof(ret->strand), row[5]);
+ret->evalue = sqlDouble(row[6]);
+ret->percentident = sqlUnsigned(row[7]);
+ret->fullname = row[8];
+ret->taxid = sqlUnsigned(row[9]);
+}
+
+struct megablastInfo *megablastInfoLoad(char **row)
+/* Load a megablastInfo from row fetched with select * from megablastInfo
+ * from database.  Dispose of this with megablastInfoFree(). */
+{
+struct megablastInfo *ret;
+
+AllocVar(ret);
+ret->chrom = cloneString(row[0]);
+ret->chromStart = sqlUnsigned(row[1]);
+ret->chromEnd = sqlUnsigned(row[2]);
+ret->name = cloneString(row[3]);
+ret->score = sqlUnsigned(row[4]);
+safecpy(ret->strand, sizeof(ret->strand), row[5]);
+ret->evalue = sqlDouble(row[6]);
+ret->percentident = sqlUnsigned(row[7]);
+ret->fullname = cloneString(row[8]);
+ret->taxid = sqlUnsigned(row[9]);
+return ret;
+}
+
+struct megablastInfo *megablastInfoLoadAll(char *fileName) 
+/* Load all megablastInfo from a whitespace-separated file.
+ * Dispose of this with megablastInfoFreeList(). */
+{
+struct megablastInfo *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[10];
+
+while (lineFileRow(lf, row))
+    {
+    el = megablastInfoLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct megablastInfo *megablastInfoLoadAllByChar(char *fileName, char chopper) 
+/* Load all megablastInfo from a chopper separated file.
+ * Dispose of this with megablastInfoFreeList(). */
+{
+struct megablastInfo *list = NULL, *el;
+struct lineFile *lf = lineFileOpen(fileName, TRUE);
+char *row[10];
+
+while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
+    {
+    el = megablastInfoLoad(row);
+    slAddHead(&list, el);
+    }
+lineFileClose(&lf);
+slReverse(&list);
+return list;
+}
+
+struct megablastInfo *megablastInfoCommaIn(char **pS, struct megablastInfo *ret)
+/* Create a megablastInfo out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new megablastInfo */
+{
+char *s = *pS;
+
+if (ret == NULL)
+    AllocVar(ret);
+ret->chrom = sqlStringComma(&s);
+ret->chromStart = sqlUnsignedComma(&s);
+ret->chromEnd = sqlUnsignedComma(&s);
+ret->name = sqlStringComma(&s);
+ret->score = sqlUnsignedComma(&s);
+sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
+ret->evalue = sqlDoubleComma(&s);
+ret->percentident = sqlUnsignedComma(&s);
+ret->fullname = sqlStringComma(&s);
+ret->taxid = sqlUnsignedComma(&s);
+*pS = s;
+return ret;
+}
+
+void megablastInfoFree(struct megablastInfo **pEl)
+/* Free a single dynamically allocated megablastInfo such as created
+ * with megablastInfoLoad(). */
+{
+struct megablastInfo *el;
+
+if ((el = *pEl) == NULL) return;
+freeMem(el->chrom);
+freeMem(el->name);
+freeMem(el->fullname);
+freez(pEl);
+}
+
+void megablastInfoFreeList(struct megablastInfo **pList)
+/* Free a list of dynamically allocated megablastInfo's */
+{
+struct megablastInfo *el, *next;
+
+for (el = *pList; el != NULL; el = next)
+    {
+    next = el->next;
+    megablastInfoFree(&el);
+    }
+*pList = NULL;
+}
+
+void megablastInfoOutput(struct megablastInfo *el, FILE *f, char sep, char lastSep) 
+/* Print out megablastInfo.  Separate fields with sep. Follow last field with lastSep. */
+{
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->chrom);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->chromStart);
+fputc(sep,f);
+fprintf(f, "%u", el->chromEnd);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->name);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->score);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->strand);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%g", el->evalue);
+fputc(sep,f);
+fprintf(f, "%u", el->percentident);
+fputc(sep,f);
+if (sep == ',') fputc('"',f);
+fprintf(f, "%s", el->fullname);
+if (sep == ',') fputc('"',f);
+fputc(sep,f);
+fprintf(f, "%u", el->taxid);
+fputc(lastSep,f);
+}
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+