src/inc/bigWig.h 1.12

Index: src/inc/bigWig.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/inc/bigWig.h,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 4 -r1.11 -r1.12
--- src/inc/bigWig.h	17 Jun 2009 15:19:00 -0000	1.11
+++ src/inc/bigWig.h	10 Nov 2009 05:45:47 -0000	1.12
@@ -36,8 +36,10 @@
 
 struct bbiFile *bigWigFileOpen(char *fileName);
 /* Open up big wig file.   Free this up with bbiFileClose */
 
+#define bigWigFileClose(a) bbiFileClose(a)
+
 struct bbiInterval *bigWigIntervalQuery(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,
 	struct lm *lm);
 /* Get data for interval.  Return list allocated out of lm. */
 
@@ -45,22 +47,22 @@
 	FILE *out);
 /* Print out info on bigWig parts that intersect chrom:start-end.   Set maxCount to 0 if you 
  * don't care how many are printed.  Returns number printed. */
 
-boolean bigWigSummaryArray(char *fileName, char *chrom, bits32 start, bits32 end,
+boolean bigWigSummaryArray(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,
 	enum bbiSummaryType summaryType, int summarySize, double *summaryValues);
 /* Fill in summaryValues with  data from indicated chromosome range in bigWig file.
  * Be sure to initialize summaryValues to a default value, which will not be touched
  * for regions without data in file.  (Generally you want the default value to either
  * be 0.0 or nan(0) depending on the application.)  Returns FALSE if no data
  * at that position. */
 
-boolean bigWigSummaryArrayExtended(char *fileName, char *chrom, bits32 start, bits32 end,
+boolean bigWigSummaryArrayExtended(struct bbiFile *bwf, char *chrom, bits32 start, bits32 end,
 	int summarySize, struct bbiSummaryElement *summary);
 /* Get extended summary information for summarySize evenely spaced elements into
  * the summary array. */
 
-double bigWigSingleSummary(char *fileName, char *chrom, int start, int end,
+double bigWigSingleSummary(struct bbiFile *bwf, char *chrom, int start, int end,
     enum bbiSummaryType summaryType, double defaultVal);
 /* Return the summarized single value for a range. */
 
 #endif /* BIGWIG_H */