src/utils/bedToBigBed/bedToBigBed.c 1.13

Index: src/utils/bedToBigBed/bedToBigBed.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/bedToBigBed/bedToBigBed.c,v
retrieving revision 1.12
retrieving revision 1.13
diff -b -B -U 4 -r1.12 -r1.13
--- src/utils/bedToBigBed/bedToBigBed.c	5 Nov 2009 19:35:01 -0000	1.12
+++ src/utils/bedToBigBed/bedToBigBed.c	5 Nov 2009 20:00:23 -0000	1.13
@@ -312,9 +312,9 @@
 	    sum->validCount += overlap;
 	    if (sum->minVal > val) sum->minVal = val;
 	    if (sum->maxVal < val) sum->maxVal = val;
 	    sum->sumData += val * overlap;
-	    sum->sumSquares += val * overlap;
+	    sum->sumSquares += val*val * overlap;
 	    bbiOutputOneSummaryFurtherReduce(sum, &twiceReducedList, doubleReductionSize, 
 		    &boundsPt, boundsEnd, usage->size, lm, f);
 
 	    /* Move summary to next part. */
@@ -331,9 +331,9 @@
 	sum->validCount += size;
 	if (sum->minVal > val) sum->minVal = val;
 	if (sum->maxVal < val) sum->maxVal = val;
 	sum->sumData += val * size;
-	sum->sumSquares += val * size;
+	sum->sumSquares += val*val * size;
 	}
     if (sum != NULL)
 	{
 	bbiOutputOneSummaryFurtherReduce(sum, &twiceReducedList, doubleReductionSize,