src/hg/encode/DAFs/HAIBChIPseq.daf 1.1

1.1 2009/10/29 19:26:15 tdreszer
New DAF for Rami
Index: src/hg/encode/DAFs/HAIBChIPseq.daf
===================================================================
RCS file: src/hg/encode/DAFs/HAIBChIPseq.daf
diff -N src/hg/encode/DAFs/HAIBChIPseq.daf
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/encode/DAFs/HAIBChIPseq.daf	29 Oct 2009 19:26:15 -0000	1.1
@@ -0,0 +1,38 @@
+# Data Agreement File for Myers/HudsonAlpha ChIP-seq experiments  $Revision$
+
+# Lab and general info
+grant             Myers
+lab               HudsonAlpha
+dataType          ChipSeq
+variables         cell, antibody
+assembly          hg18
+medianFragmentLength 225
+fragmentLengthRange  150-300
+dafVersion        1.1
+validationSettings validateFiles.tagAlign:mmCheckOneInN=100,mismatches=2,matchFirst=32,nMatch
+
+# Track/view definition
+view             Peaks
+longLabelPrefix  HudsonAlpha ChIP-Seq Peaks
+type             broadPeak
+hasReplicates    yes
+required         no
+
+view             Alignments
+longLabelPrefix  HudsonAlpha ChIP-Seq Alignments
+type             tagAlign
+hasReplicates    yes
+required         no
+
+view             RawSignal
+longLabelPrefix  HudsonAlpha ChIP-Seq Raw Signal
+type             wig
+hasReplicates    yes
+required         no
+
+view             RawData
+type             fastq
+hasReplicates    yes 
+required         no
+
+