src/hg/trfBig/trfBig.c 1.18

1.18 2009/11/02 21:27:50 hiram
Allow maybeSystem() to only warn on system errors. trf always exits with an error

Index: src/hg/trfBig/trfBig.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/trfBig/trfBig.c,v
retrieving revision 1.17
retrieving revision 1.18
diff -b -B -U 4 -r1.17 -r1.18
--- src/hg/trfBig/trfBig.c	23 Sep 2009 18:42:26 -0000	1.17
+++ src/hg/trfBig/trfBig.c	2 Nov 2009 21:27:50 -0000	1.18
@@ -103,9 +103,9 @@
 char command[1024];
 sprintf(command, "cd %s; %s %s 2 7 7 80 10 50 %d -m %s", 
 	tempDir, trfExe, faFile, maxPeriod, doBed ? "-d" : "");
 uglyf("faFile %s, command %s\n", faFile, command);
-mustSystem(command);
+maybeSystem(command);
 }
 
 void outputWithBreaks(FILE *out, char *s, int size, int lineSize)
 /* Print s of given size to file, adding line feeds every now and then. */