angie: changes by commit
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branch to review (2009-10-27 to 2009-11-03) v219
- DGV: Change the default filter to include-all instead of exclude-none -- positive logic is more intuitive. (Thx b0b)
- src/hg/hgTrackUi/hgTrackUi.c 1.506 - lines changed: 8, context: html, text, full: html, text
- Added setUdcCacheDir() as in hgTracks, hgc etc. Without it, files were being initialized in /tmp/udcCache not our locally configured /data/apache/trash/udcCache.
- src/hg/hgCustom/hgCustom.c 1.133 - lines changed: 2, context: html, text, full: html, text
- Gordon Robertson request: make gray lighter for unpaired ends.
- src/hg/hgTracks/bamTrack.c 1.14 - lines changed: 1, context: html, text, full: html, text
- Better error message in bamLoader.
- src/hg/lib/customFactory.c 1.107 - lines changed: 2, context: html, text, full: html, text
- If udcFuse.mountPoint is set in hg.conf, translate BAM URLs into filenames underneath that mount point, which mirrors the local udc cacheDir's hierarchy. Open the URL for bam and the associated .bai index file using udc, to make sure that the translated filenames will exist.
- src/hg/lib/bamFile.c 1.12 - lines changed: 71, context: html, text, full: html, text
- Make errCatch POSIX thread (pthread) safe: instead of a single global stack, use per-thread stacks hashed by thread ID.
- src/lib/errCatch.c 1.4 - lines changed: 25, context: html, text, full: html, text
- Support for udcFuse and apps that will read files from it: plug minor memory leaks, use errAbort not assert, make udcFileMayOpen public, make udcParseUrl public so apps can determine path to file in udcFuse, add udcPathToUrl and udcSizeFromCache so that udcFuse can report the correct total file size.
- First cut, mostly works but performance is not yet satisfactory.
- src/fuse/udcFuse/makefile 1.1 - lines changed: 18, context: html, text, full: html, text
- src/fuse/udcFuse/udcFuse.c 1.1 - lines changed: 390, context: html, text, full: html, text
- Hooking udcFuse into top-level build
- Should have finished writing it first.
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