braney: changes by commit

branch to review (2009-10-27 to 2009-11-03) v219

• new GIS RNA-seq data
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.626 - lines changed: 166, context: html, text, full: html, text
• fix sortOrder
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.629 - lines changed: 1, context: html, text, full: html, text
• fix typo
  • src/hg/bedItemOverlapCount/bedItemOverlapCount.c 1.20 - lines changed: 1, context: html, text, full: html, text
• new Hannon lab short RNA-seq description
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.html 1.1 - lines changed: 105, context: html, text, full: html, text
• started building hgPal downloads
  • src/hg/makeDb/doc/hg19.txt 1.54 - lines changed: 153, context: html, text, full: html, text
• dereference symbolic links
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.21 - lines changed: 1, context: html, text, full: html, text
• add some text about the color display
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.html 1.2 - lines changed: 1, context: html, text, full: html, text
• add some V2's to the CSHL long RNA-seq K562 cytosol tables
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.637 - lines changed: 8, context: html, text, full: html, text
• add some Release Notes
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.html 1.4 - lines changed: 8, context: html, text, full: html, text
• initialize some variables
  • src/lib/udc.c 1.19 - lines changed: 1, context: html, text, full: html, text