markd: changes by file

branch to review (2009-10-27 to 2009-11-03) v219

• src/cdnaAli/cluster/makefile
  • 1.7 lines changed: 3, context: html, text, full: html, text
    allow overriding the location of libpng
• src/hg/pslMap/tests/expected/gapBoth.psl
  • 1.3 lines changed: 1, context: html, text, full: html, text
    set t/q insert stats in mapped psl
• src/hg/pslMap/tests/expected/kgProt.psl
  • 1.4 lines changed: 5, context: html, text, full: html, text
    set t/q insert stats in mapped psl
• src/hg/pslMap/tests/expected/mrnaMapOver.psl
  • 1.2 lines changed: 1, context: html, text, full: html, text
    set t/q insert stats in mapped psl
• src/hg/pslMap/tests/expected/mrnaMrnaMap.psl
  • 1.2 lines changed: 7, context: html, text, full: html, text
    set t/q insert stats in mapped psl
• src/hg/pslMap/tests/expected/mrnaMrnaXMap.psl
  • 1.2 lines changed: 17, context: html, text, full: html, text
    set t/q insert stats in mapped psl
• src/hg/pslMap/tests/expected/negQChain.psl
  • 1.2 lines changed: 1, context: html, text, full: html, text
    set t/q insert stats in mapped psl
• src/hg/pslStats/pslStats.c
  • 1.9 lines changed: 6, context: html, text, full: html, text
    fixed bug computing mean query size
• src/hg/pslStats/tests/makefile
  • 1.6 lines changed: 11, context: html, text, full: html, text
    fixed bug computing mean query size
• src/hg/pslStats/tests/expected/cdna2cdnaOverallTest.stats
  • 1.3 lines changed: 1, context: html, text, full: html, text
    fixed bug computing mean query size
• src/hg/pslStats/tests/expected/untransOverallTest.stats
  • 1.5 lines changed: 1, context: html, text, full: html, text
    fixed bug computing mean query size
• src/hg/pslStats/tests/expected/untransOverallUnalnTest.stats
  • 1.5 lines changed: 1, context: html, text, full: html, text
    fixed bug computing mean query size
• src/inc/common.mk
  • 1.73 lines changed: 8, context: html, text, full: html, text
    allow overriding the location of libpng
• src/lib/pngwrite.c
  • 1.3 lines changed: 9, context: html, text, full: html, text
    png portability changes for ubuntu and gcc 4.3.3
• src/lib/pslTransMap.c
  • 1.8 lines changed: 14, context: html, text, full: html, text
    set t/q insert stats in mapped psl