src/hg/makeDb/doc/bosTauMd3.txt 1.4
1.4 2009/11/30 19:10:04 galt
finishing touches on MD3 liftover
Index: src/hg/makeDb/doc/bosTauMd3.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/bosTauMd3.txt,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 4 -r1.3 -r1.4
--- src/hg/makeDb/doc/bosTauMd3.txt 25 Nov 2009 22:30:52 -0000 1.3
+++ src/hg/makeDb/doc/bosTauMd3.txt 30 Nov 2009 19:10:04 -0000 1.4
@@ -153,21 +153,13 @@
###################################################
-#Add a row for bosTauMd3 to hgcentraltest.dbDb with active=0:
+#Change bosTauMd3 in hgcentraltest.dbDb to active=0:
hgsql hgcentraltest
-INSERT INTO dbDb
- (name, description, nibPath, organism,
- defaultPos, active, orderKey, genome, scientificName,
- htmlPath, hgNearOk, hgPbOk, sourceName, taxId)
-VALUES
- ("bosTauMd3", "Aug. 2009", "/gbdb/bosTauMd3", "Cow",
- "chr1:2-3", 0, 235, "Cow", "Bos taurus",
- "/gbdb/bosTauMd3/html/description.html", 0, 0, "UMD3",
- 9913);
-
-#The /gbdb/ stuff does not have to exist, those are just placeholders.
-
-
+update dbDb set active=0 where name='bosTauMd3';
+# changed because liftover is confusing otherwise
+# when people are expecting successive versions
+# of the same assembly rather than alternate assemblies.
+update dbDb set description='Aug. 2009 (UMD3)' where name='bosTauMd3';