src/hg/makeDb/doc/hg19.txt 1.62

Index: src/hg/makeDb/doc/hg19.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg19.txt,v
retrieving revision 1.61
retrieving revision 1.62
diff -b -B -U 4 -r1.61 -r1.62
--- src/hg/makeDb/doc/hg19.txt	11 Nov 2009 01:07:36 -0000	1.61
+++ src/hg/makeDb/doc/hg19.txt	18 Nov 2009 21:12:55 -0000	1.62
@@ -7258,8 +7258,23 @@
 
 # Make mapping between known genes and allenBrain
    hgMapToGene hg19 allenBrainAli -type=psl knownGene knownToAllenBrain
 
+#############################################################################
+# ADD ALLEN BRAIN CORTEXT LINK (DONE, 11/18/09 kent)
+
+# Copy over version from hg18 since we don't have new data from Allen Brain
+# Inst.
+    cd /cluster/data/hg19/bed/allenBrain
+    cp /cluster/data/hg18/bed/allenBrain/allenBrainGene.tab .
+
+# Load it into database.
+
+    hgsql hg19 < ~/src/hg/lib/allenBrainGene.sql
+    hgsql hg19 -e \
+    'load data local infile "allenBrainGene.tab" into table allenBrainGene'
+
+
 ############################################################################
 ## Annotate 46-way multiple alignment with gene annotations
 ##		(DONE - 2008-12-08,23 - Hiram)
     # Gene frames