src/hg/makeDb/hgTrackDb/hgTrackDb.c 1.54
1.54 2009/11/18 17:41:23 hiram
Add -settings option for debug scanning of trackDb settings hash variables
Index: src/hg/makeDb/hgTrackDb/hgTrackDb.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/hgTrackDb/hgTrackDb.c,v
retrieving revision 1.53
retrieving revision 1.54
diff -b -B -U 4 -r1.53 -r1.54
--- src/hg/makeDb/hgTrackDb/hgTrackDb.c 19 Jun 2009 23:53:39 -0000 1.53
+++ src/hg/makeDb/hgTrackDb/hgTrackDb.c 18 Nov 2009 17:41:23 -0000 1.54
@@ -39,8 +39,10 @@
" -strict - only include tables that exist (and complain about missing html files).\n"
" -raName=trackDb.ra - Specify a file name to use other than trackDb.ra\n"
" for the ra files.\n"
" -release=alpha|beta - Include trackDb entries with this release only.\n"
+ " -settings - for trackDb scanning, output table name, type line,\n"
+ " - and settings hash to stderr while loading everything\n"
);
}
static struct optionSpec optionSpecs[] = {
@@ -49,13 +51,15 @@
{"raName", OPTION_STRING},
{"strict", OPTION_BOOLEAN},
{"hideFirst", OPTION_BOOLEAN},
{"release", OPTION_STRING},
+ {"settings", OPTION_BOOLEAN},
{NULL, 0}
};
static char *raName = "trackDb.ra";
static char *release = "alpha";
+static bool showSettings = FALSE;
static boolean hasNonAsciiChars(char *text)
/* check if text has any non-printing or non-ascii characters */
{
@@ -664,8 +668,20 @@
{
char *settings = settingsFromHash(td->settingsHash);
updateBigTextField(conn, trackDbName, "tableName", td->tableName,
"settings", settings);
+ if (showSettings)
+ {
+ verbose(1, "%s: type='%s';", td->tableName, td->type);
+ if (isNotEmpty(settings))
+ {
+ char *oneLine = replaceChars(settings, "\n", "; ");
+ eraseTrailingSpaces(oneLine);
+ verbose(1, " %s", oneLine);
+ freeMem(oneLine);
+ }
+ verbose(1, "\n");
+ }
freeMem(settings);
}
}
@@ -680,8 +696,9 @@
optionInit(&argc, argv, optionSpecs);
if (argc != 6)
usage();
raName = optionVal("raName", raName);
+showSettings = optionExists("settings");
if (strchr(raName, '/') != NULL)
errAbort("-raName value should be a file name without directories");
release = optionVal("release", release);