src/hg/makeDb/trackDb/README 1.94
1.94 2009/12/01 05:36:23 kent
Adding bigBed-specific optional field denseCoverage to trackDb system. One example of it is in wgEncodeGisRnaSeq.
Index: src/hg/makeDb/trackDb/README
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/README,v
retrieving revision 1.93
retrieving revision 1.94
diff -b -B -U 4 -r1.93 -r1.94
--- src/hg/makeDb/trackDb/README 30 Nov 2009 21:06:32 -0000 1.93
+++ src/hg/makeDb/trackDb/README 1 Dec 2009 05:36:23 -0000 1.94
@@ -247,8 +247,14 @@
This uses a binary indexed file rather than a database table. It is, other than
substituting "bigBed" for "bed" in the type line, the same as the "type bed"
explained above.
+ bigBed-specific optional field:
+ denseCoverage maxVal
+ In dense mode do a density plot based on maximum coverage seen under pixel. The maxVal
+ corresponds to the count at which it gets as dark as it can get. If maxVal is 0 then this
+ will be calculated from the data itself.
+
18. type bigWig [lower] [upper]
This uses a binary indexed file rather than a database table. It is, other than
substituting "bigWig" for "wig" in the type line, the same as the "type wig"
explained above.