src/product/ex.hg.conf 1.19

1.19 2009/11/18 17:36:52 hiram
adding geographic allele frequency images options
Index: src/product/ex.hg.conf
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/product/ex.hg.conf,v
retrieving revision 1.18
retrieving revision 1.19
diff -b -B -U 4 -r1.18 -r1.19
--- src/product/ex.hg.conf	18 Nov 2009 01:10:54 -0000	1.18
+++ src/product/ex.hg.conf	18 Nov 2009 17:36:52 -0000	1.19
@@ -75,9 +75,9 @@
 customTracks.host=<your specific host name>
 customTracks.user=<your specific MySQL user for this function>
 customTracks.password=<MySQL password for specified user>
 customTracks.useAll=yes
-customTracks.tmpdir=/data/tmp
+customTracks.tmpdir=/data/tmp/ct
 #	tmpdir of /data/tmp is the default location if not specified here
 #	Set this to a directory as recommended in the genomewiki
 #	discussion mentioned above.
 
@@ -173,8 +173,17 @@
 #	specified by your analytics account
 #  set key for analytics account, used in the getTracker(key) function
 #  analyticsKey=<your analytics key>
 
+# These settings enable geographic allele frequency images on the 
+# details pages for the HGDP Allele Frequency (hgdpGeo) track.
+# (HGDP = Human Genome Diversity Project)
+# Programs required for per-SNP geographic maps of HGDP population
+# allele frequencies:
+hgc.psxyPath=/hive/data/outside/GMT4.3.1/bin/psxy
+hgc.ps2rasterPath=/hive/data/outside/GMT4.3.1/bin/ps2raster
+hgc.ghostscriptPath=/usr/bin/ghostscript
+
 # Customize your downloads.server machine name here
 # downloads.server=<your download server machine>
 
 # enable user specific javascript