src/shortReads/itsaMake/itsaMake.c 1.5

Index: src/shortReads/itsaMake/itsaMake.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/shortReads/itsaMake/itsaMake.c,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 4 -r1.4 -r1.5
--- src/shortReads/itsaMake/itsaMake.c	14 Nov 2008 21:56:41 -0000	1.4
+++ src/shortReads/itsaMake/itsaMake.c	24 Nov 2009 15:51:11 -0000	1.5
@@ -57,10 +57,11 @@
 }
 
 static void indexChromPass1(struct chromInfo *chrom, DNA *allDna,  
 	bits32 *offsetArray, bits32 *listArray, bits32 *index13)
-/* Create a itsaOneBaseListy for each base in seq, and hang it in appropriate slot
- * in listyIndex. */
+/* Do crude sorting of suffexes in allDna into lists formed by listArray 
+ * (for next) pointers, and offsetArray (for data - positions in genome).
+ * Each list will be in a bucket in index13. */
 {
 bits32 baseIx;
 bits32 seqSize = chrom->size;
 bits32 chromOffset = chrom->offset;