src/utils/bedToBigBed/makefile 1.8

1.8 2009/11/12 23:15:52 kent
First cut of compressed bigWig/bigBed stuff. So far read side should be complete including Genome Browser, Table Browser, wigToBigWig and bigWig utility functions. Still to do bedGraphToBigWig and bedToBigBed.

Index: src/utils/bedToBigBed/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/bedToBigBed/makefile,v
retrieving revision 1.7
retrieving revision 1.8
diff -b -B -U 1000000 -r1.7 -r1.8
--- src/utils/bedToBigBed/makefile	22 Sep 2009 21:03:58 -0000	1.7
+++ src/utils/bedToBigBed/makefile	12 Nov 2009 23:15:52 -0000	1.8
@@ -1,28 +1,28 @@
 include ../../inc/common.mk
 
-L += -lm ${SOCKETLIB}
+L += -lm -lz ${SOCKETLIB}
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS = ${MYLIBDIR}/jkweb.a
 
 A = bedToBigBed
 O = bedToBigBed.o
 
 bedToBigBed: $O ${MYLIBS}
 	@${MKDIR} "${DESTDIR}${BINDIR}"
 	${CC} ${COPT} ${CFLAGS} -o ${DESTDIR}${BINDIR}/${A}${EXE} $O ${MYLIBS} ${L}
 	${STRIP} ${DESTDIR}${BINDIR}/${A}${EXE}
 
 compile:: ${A}.c
 	${CC} ${COPT} ${CFLAGS} -o ${A}${EXE} $O ${MYLIBS} ${L}
 
 clean::
 	rm -f ${O} ${A}
 	rm -fr tests/output
 
 test:
 	@rm -fr tests/output
 	@${MKDIR} tests/output
 	${A} -as=itemRgb.as itemRgb.bed chrom.sizes tests/output/itemRgb.bb 2> /dev/null
 	bigBedToBed tests/output/itemRgb.bb test_itemRgb.bed
 	diff itemRgb.bed test_itemRgb.bed
 	rm -fr tests/output test_itemRgb.bed