src/utils/bigBedInfo/bigBedInfo.c 1.2

Index: src/utils/bigBedInfo/bigBedInfo.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/bigBedInfo/bigBedInfo.c,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/utils/bigBedInfo/bigBedInfo.c	5 Nov 2009 19:57:31 -0000	1.1
+++ src/utils/bigBedInfo/bigBedInfo.c	13 Nov 2009 19:02:38 -0000	1.2
@@ -1,78 +1,99 @@
 /* bigBedInfo - Show information about a bigBed file.. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "udc.h"
 #include "bbiFile.h"
 #include "bigBed.h"
+#include "obscure.h"
 #include "hmmstats.h"
 
 static char const rcsid[] = "$Id$";
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "bigBedInfo - Show information about a bigBed file.\n"
   "usage:\n"
   "   bigBedInfo file.bb\n"
   "options:\n"
   "   -udcDir=/dir/to/cache - place to put cache for remote bigBed/bigWigs\n"
   "   -chroms - list all chromosomes and their sizes\n"
+  "   -zooms - list all zoom levels and theier sizes\n"
   "   -as - get autoSql spec\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"udcDir", OPTION_STRING},
    {"chroms", OPTION_BOOLEAN},
+   {"zooms", OPTION_BOOLEAN},
    {"as", OPTION_BOOLEAN},
    {NULL, 0},
 };
 
+void printLabelAndLongNumber(char *label, long long l)
+/* Print label: 1,234,567 format number */
+{
+printf("%s: ", label);
+printLongWithCommas(stdout, l);
+printf("\n");
+}
+
 void bigBedInfo(char *fileName)
 /* bigBedInfo - Show information about a bigBed file.. */
 {
 struct bbiFile *bbi = bigBedFileOpen(fileName);
 printf("version: %d\n", bbi->version);
+printf("isCompressed: %s\n", (bbi->uncompressBufSize > 0 ? "yes" : "no"));
 printf("isSwapped: %d\n", bbi->isSwapped);
-printf("itemCount: %lld\n", bigBedItemCount(bbi));
+printLabelAndLongNumber("itemCount", bigBedItemCount(bbi));
+printLabelAndLongNumber("primaryDataSize", bbi->unzoomedIndexOffset - bbi->unzoomedDataOffset);
+if (bbi->levelList != NULL)
+    {
+    long long indexEnd = bbi->levelList->dataOffset;
+    printLabelAndLongNumber("primaryIndexSize", indexEnd - bbi->unzoomedIndexOffset);
+    }
 printf("zoomLevels: %d\n", bbi->zoomLevels);
-struct bbiZoomLevel *zoom;
-for (zoom = bbi->levelList; zoom != NULL; zoom = zoom->next)
-    printf("\t%d\n", zoom->reductionLevel);
+if (optionExists("zooms"))
+    {
+    struct bbiZoomLevel *zoom;
+    for (zoom = bbi->levelList; zoom != NULL; zoom = zoom->next)
+	printf("\t%d\t%d\n", zoom->reductionLevel, (int)(zoom->indexOffset - zoom->dataOffset));
+    }
 struct bbiChromInfo *chrom, *chromList = bbiChromList(bbi);
 printf("chromCount: %d\n", slCount(chromList));
 if (optionExists("chroms"))
     for (chrom=chromList; chrom != NULL; chrom = chrom->next)
 	printf("\t%s %d %d\n", chrom->name, chrom->id, chrom->size);
 if (optionExists("as"))
     {
     char *asText = bigBedAutoSqlText(bbi);
     if (asText == NULL)
         printf("as:  n/a\n");
     else
 	{
 	printf("as:\n");
 	printf("%s", asText);
 	}
     }
 struct bbiSummaryElement sum = bbiTotalSummary(bbi);
-printf("basesCovered: %lld\n", sum.validCount);
+printLabelAndLongNumber("basesCovered", sum.validCount);
 printf("meanDepth (of bases covered): %f\n", sum.sumData/sum.validCount);
 printf("minDepth: %f\n", sum.minVal);
 printf("maxDepth: %f\n", sum.maxVal);
 printf("std of depth: %f\n", calcStdFromSums(sum.sumData, sum.sumSquares, sum.validCount));
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 2)
     usage();
 udcSetDefaultDir(optionVal("udcDir", udcDefaultDir()));
 bigBedInfo(argv[1]);
 return 0;
 }