src/utils/makefile 1.74
1.74 2009/11/13 00:26:29 kent
Adding new bigWigToWig utility. You won't get _exactly_ the same wig that you gave to wigToBigWig back. It'll omit printing the decimal point in the floating point values when possible, and also it will break up large sections into medium-sized ones. Still at least it keeps fixedStep and varStep rather than converting everything to bedGraph.
Index: src/utils/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/makefile,v
retrieving revision 1.73
retrieving revision 1.74
diff -b -B -U 1000000 -r1.73 -r1.74
--- src/utils/makefile 21 Jul 2009 20:52:43 -0000 1.73
+++ src/utils/makefile 13 Nov 2009 00:26:29 -0000 1.74
@@ -1,152 +1,153 @@
# Build all directories in utils
include ../inc/common.mk
all:
@for D in $(USE_DIRS) x; do \
if test "$$D" != "x" ; then \
( cd $$D && echo $$D && $(MAKE) ) ;\
x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
fi ;\
done
scripts:
@for F in ${SCRIPT_FILES}; do \
chmod +x $$F; \
rm -f ${SCRIPTS}/$${F}; \
echo cp -p $$F ${SCRIPTS}; \
cp -p $$F ${SCRIPTS}; \
done
chmod +x genePredToBed/genePredToBed;
rm -f ${SCRIPTS}/genePredToBed;
echo cp -p genePredToBed/genePredToBed ${SCRIPTS};
@cp -p genePredToBed/genePredToBed ${SCRIPTS};
cd cvsTools && ${MAKE} scripts
alpha: scripts all
test:
cd faToTwoBit && ${MAKE} test
cd twoBitToFa && ${MAKE} test
cd twoBitInfo && ${MAKE} test
clean:
touch non-empty-rm.o
- find . -name \*.o -print | xargs rm
SCRIPT_FILES = \
agpToLift \
iSync \
lodToBedScore \
mkMafFrames.pl
# List of directories to build
USE_DIRS = $(DIRS)
DIRS = \
aNotB \
addCols \
ave \
aveCols \
bedGraphToBigWig \
bedToBigBed \
bigBedSummary \
bigBedToBed \
bigWigInfo \
bigWigSummary \
bigWigToBedGraph \
+ bigWigToWig \
calc \
catDir \
catUncomment \
ccCp \
chopFaLines \
countChars \
convolve \
cvsTools \
detab \
endsInLf \
fastqToFa \
faAlign \
faCmp \
faCount \
faFilterN \
faFilter \
faFlyBaseToUcsc \
faFrag \
faGapLocs \
faGapSizes \
faNcbiToUcsc \
faNoise \
faOneRecord \
faPolyASizes \
faRc \
faSimplify \
faSize \
faSomeRecords \
faSplit \
faToFastq \
faToNib \
faToTab \
faToTwoBit \
faTrans \
faTrimPolyA \
faTrimRead \
findMotif \
fixCr \
gapSplit \
gffPeek \
headRest \
htmlPics \
htmlCheck \
jkUniq \
lineCount \
newProg \
nibFrag \
nibSize \
nt4Frag \
pslToPslx \
pslToXa \
randomLines \
raToTab \
raToLines \
rmFaDups \
rowsToCols \
scaffoldFaToAgp \
scrambleFa \
sizeof \
spacedToTab \
splitFile \
splitFileByColumn \
stringify \
subChar \
subColumn \
subs \
tableSum \
tailLines \
textHist2 \
textHistogram \
tickToDate \
timing \
toLower \
toUpper \
twoBitInfo \
twoBitToFa \
udcCleanup \
undupFa \
upper \
venn \
weedLines \
wigToBigWig \
wigTestMaker \
wordLine
BAD_DIRS= \
ccCpLock \
est2genomeToPsl \
geneStarts \
gtfToGenePred \
jimgrep \
jkShell \
dnsInfo \
wigAsciiToBinary \
cCp