braney: changes by commit

branch to review (2009-11-10 to 2009-11-17) v220

• changing CSHL long RNA-seq signal tracks to bedGraph
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.646 - lines changed: 30, context: html, text, full: html, text
• make LOG the default transform for CSHL long RNA-seq signals
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.647 - lines changed: 15, context: html, text, full: html, text
• change GIS signal tracks to normal wiggles and make them LOG
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.648 - lines changed: 36, context: html, text, full: html, text
• change Cshl short RNA-seq to use bedGraph instead of bigWig
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.649 - lines changed: 54, context: html, text, full: html, text
• fix up the long labels for GIS RNA-seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.650 - lines changed: 33, context: html, text, full: html, text
• take out GIS Pet Rna
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.651 - lines changed: 422, context: html, text, full: html, text
• add GIS RNA PET back in
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.652 - lines changed: 664, context: html, text, full: html, text
• fix short labels for GIS RNA Pet
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.653 - lines changed: 51, context: html, text, full: html, text
• fix up prostate signals
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.654 - lines changed: 6, context: html, text, full: html, text
• continue to make Tim do most of the work (Bwahhh haha)
  • src/hg/encode/encodeValidate/config/labs.ra 1.10 - lines changed: 1, context: html, text, full: html, text
• started Human Proteins
  • src/hg/makeDb/doc/susScr1.txt 1.2 - lines changed: 164, context: html, text, full: html, text
• fix long label and some view setting for CSHL short RNA-seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.657 - lines changed: 40, context: html, text, full: html, text
• human proteins
  • src/hg/makeDb/doc/susScr1.txt 1.3 - lines changed: 12, context: html, text, full: html, text