src/utils/bedGraphToBigWig/bedGraphToBigWig.c 1.22
1.22 2009/11/16 18:12:04 kent
Making compression the default for the bigBed and bigWig creators.
Index: src/utils/bedGraphToBigWig/bedGraphToBigWig.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/bedGraphToBigWig/bedGraphToBigWig.c,v
retrieving revision 1.21
retrieving revision 1.22
diff -b -B -U 4 -r1.21 -r1.22
--- src/utils/bedGraphToBigWig/bedGraphToBigWig.c 13 Nov 2009 23:46:50 -0000 1.21
+++ src/utils/bedGraphToBigWig/bedGraphToBigWig.c 16 Nov 2009 18:12:04 -0000 1.22
@@ -34,17 +34,17 @@
"and out.bw is the output indexed big wig file.\n"
"options:\n"
" -blockSize=N - Number of items to bundle in r-tree. Default %d\n"
" -itemsPerSlot=N - Number of data points bundled at lowest level. Default %d\n"
- " -compress - If set use zlib compression."
+ " -unc - If set, do not use compression."
, bbiCurrentVersion, blockSize, itemsPerSlot
);
}
static struct optionSpec options[] = {
{"blockSize", OPTION_INT},
{"itemsPerSlot", OPTION_INT},
- {"compress", OPTION_BOOLEAN},
+ {"unc", OPTION_BOOLEAN},
{NULL, 0},
};
struct sectionItem
@@ -532,9 +532,9 @@
{
optionInit(&argc, argv, options);
blockSize = optionInt("blockSize", blockSize);
itemsPerSlot = optionInt("itemsPerSlot", itemsPerSlot);
-doCompress = optionExists("compress");
+doCompress = !optionExists("unc");
if (argc != 4)
usage();
bedGraphToBigWig(argv[1], argv[2], argv[3]);
return 0;