src/hg/makeDb/schema/all.joiner 1.749
1.749 2009/12/11 22:58:05 ann
two new SCOP rules
Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.748
retrieving revision 1.749
diff -b -B -U 4 -r1.748 -r1.749
--- src/hg/makeDb/schema/all.joiner 11 Dec 2009 18:54:09 -0000 1.748
+++ src/hg/makeDb/schema/all.joiner 11 Dec 2009 22:58:05 -0000 1.749
@@ -1371,8 +1371,19 @@
"pfam description for each accession"
$kgDb.pfamDesc.pfamAC
$kgDb.knownToPfam.value
+identifier scopName
+"scop Domain Names"
+ $kgDb.ucscScop.domainName dupeOk
+ $kgDb.scopDesc.name full minCheck=0.60
+
+identifier scopToUcscId
+"scop Domains to UCSC Id"
+ $kgDb.kgProtMap2.qName
+ $kgDb,!hg18.ucscScop.ucscId minCheck=0.99
+ hg18.ucscScop.ucscId minCheck=0.70
+
identifier knownIsoformCluster
"ID of a cluster of overlapping known genes"
$kgDb.knownCanonical.clusterId
$kgDb.knownIsoforms.clusterId full