src/hg/makeDb/trackDb/README 1.95
1.95 2009/12/11 18:29:00 hiram
Indicate the loading procedure for a bigWig file.
Index: src/hg/makeDb/trackDb/README
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/README,v
retrieving revision 1.94
retrieving revision 1.95
diff -b -B -U 4 -r1.94 -r1.95
--- src/hg/makeDb/trackDb/README 1 Dec 2009 05:36:23 -0000 1.94
+++ src/hg/makeDb/trackDb/README 11 Dec 2009 18:29:00 -0000 1.95
@@ -254,11 +254,17 @@
corresponds to the count at which it gets as dark as it can get. If maxVal is 0 then this
will be calculated from the data itself.
18. type bigWig [lower] [upper]
- This uses a binary indexed file rather than a database table. It is, other than
- substituting "bigWig" for "wig" in the type line, the same as the "type wig"
- explained above.
+ This uses a binary indexed file rather than a database table. It is, other
+ than substituting "bigWig" for "wig" in the type line, the same as the
+ "type wig" explained above. The database loading procedure is simply:
+ hgsql hg19 -e 'drop table if exists myLocalBigWig; \
+ create table myLocalBigWig (fileName varchar(255) not null); \
+ insert into myLocalBigWig values
+ ("/gbdb/hg19/bbi/myLocalBigWig.bw");'
+ I believe this works even if the entry is a URL to a remote
+ bigWig file.
If something lacks a type field it needs to have custom
display routines. You can remove a track from the
browser by removing it from the .ra file and doing