src/hg/makeDb/trackDb/trackDb.ra 1.552
1.552 2009/12/11 22:06:09 hiram
bosTau3 is now ready for chainNet composite
Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.551
retrieving revision 1.552
diff -b -B -U 4 -r1.551 -r1.552
--- src/hg/makeDb/trackDb/trackDb.ra 11 Dec 2009 20:12:24 -0000 1.551
+++ src/hg/makeDb/trackDb/trackDb.ra 11 Dec 2009 22:06:09 -0000 1.552
@@ -2903,9 +2903,11 @@
spectrum on
type netAlign bosTau4 chainBosTau4
otherDb bosTau4
+# release beta until composite chainNetBosTau3 track becomes the default
track chainBosTau3
+release beta
shortLabel $o_db Chain
longLabel $o_Organism ($o_date/$o_db) Chained Alignments
group compGeno
priority 256.3
@@ -2918,8 +2920,9 @@
type chain bosTau3
otherDb bosTau3
track netBosTau3
+release beta
shortLabel $o_db Net
longLabel $o_Organism ($o_date/$o_db) Alignment Net
group compGeno
priority 256.4
@@ -2938,9 +2941,10 @@
visibility hide
color 100,50,0
altColor 255,240,200
spectrum on
-chainMinScore 2000
+chainMinScore 3000
+chainLinearGap medium
matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
matrixHeader A, C, G, T
type chain bosTau2
otherDb bosTau2