kent: changes by commit

review to branch (2009-12-09 to 2009-12-14) v221

• Adding shortLabel to view. Fixing small indentation problem.
  • src/hg/oneShot/tdbRewriteViewsToSubtracks/tdbRewriteViewsToSubtracks.c 1.2 - lines changed: 7, context: html, text, full: html, text
• Adding view tag to view.
  • src/hg/oneShot/tdbRewriteViewsToSubtracks/tdbRewriteViewsToSubtracks.c 1.3 - lines changed: 4, context: html, text, full: html, text
• Run of tdbRewriteReduceReplaces.
  • src/hg/makeDb/trackDb/alpaca/vicPac1/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/borEut13/trackDb.ra 1.9 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg10/trackDb.ra 1.10 - lines changed: 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg11/trackDb.ra 1.5 - lines changed: 78, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg12/trackDb.ra 1.7 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg4/trackDb.ra 1.12 - lines changed: 67, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/canHg9/trackDb.ra 1.7 - lines changed: 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/car46/trackDb.ra 1.9 - lines changed: 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/catArr1/trackDb.ra 1.6 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/euaGli13/trackDb.ra 1.5 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/gliRes13/trackDb.ra 1.5 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/homIni13/trackDb.ra 1.8 - lines changed: 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/homIni14/trackDb.ra 1.7 - lines changed: 74, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/ancestor/homPan20/trackDb.ra 1.5 - lines changed: 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/priMat13/trackDb.ra 1.7 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/rodEnt13/trackDb.ra 1.5 - lines changed: 82, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ancestor/trackDb.ra 1.9 - lines changed: 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/anopheles/trackDb.ra 1.19 - lines changed: 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/apiMel1/trackDb.ra 1.11 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/apiMel2/trackDb.ra 1.26 - lines changed: 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/apis/trackDb.ra 1.14 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/armadillo/dasNov2/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/baboon/papHam1/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/felCat3/trackDb.ra 1.24 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cat/trackDb.ra 1.6 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal1/trackDb.ra 1.15 - lines changed: 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal2/trackDb.ra 1.72 - lines changed: 115, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal3/trackDb.ra 1.15 - lines changed: 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/trackDb.ra 1.15 - lines changed: 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra 1.39 - lines changed: 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra 1.46 - lines changed: 102, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/trackDb.ra 1.24 - lines changed: 71, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau1/trackDb.ra 1.18 - lines changed: 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra 1.9 - lines changed: 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau3/trackDb.ra 1.8 - lines changed: 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra 1.19 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/trackDb.ra 1.5 - lines changed: 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam1/trackDb.ra 1.37 - lines changed: 53, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.40 - lines changed: 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFamPoodle1/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.ra 1.27 - lines changed: 93, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dolphin/turTru1/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm1/trackDb.ra 1.60 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm2/trackDb.ra 1.59 - lines changed: 139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm3/trackDb.ra 1.15 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dp1/trackDb.ra 1.15 - lines changed: 14, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/drosophila/droAna1/trackDb.ra 1.14 - lines changed: 68, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/drosophila/droEre1/trackDb.ra 1.13 - lines changed: 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droGri1/trackDb.ra 1.8 - lines changed: 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj1/trackDb.ra 1.13 - lines changed: 67, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droMoj2/trackDb.ra 1.6 - lines changed: 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droPer1/trackDb.ra 1.4 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droSec1/trackDb.ra 1.3 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droSim1/trackDb.ra 1.19 - lines changed: 98, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droVir1/trackDb.ra 1.13 - lines changed: 67, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droVir2/trackDb.ra 1.6 - lines changed: 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droYak1/trackDb.ra 1.16 - lines changed: 73, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/droYak2/trackDb.ra 1.6 - lines changed: 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/trackDb.ra 1.83 - lines changed: 53, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr2/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/loxAfr3/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr1/trackDb.ra 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/fr2/trackDb.ra 1.9 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/fugu/trackDb.ra 1.64 - lines changed: 151, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor1/trackDb.ra 1.3 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra 1.8 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/haplotypes/hg19Haps/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hedgehog/eriEur1/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hiv1/trackDb.ra 1.14 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hivVax003Vax004/trackDb.ra 1.7 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hiva244/trackDb.ra 1.3 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hivgne8/trackDb.ra 1.8 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hivgne8v2/trackDb.ra 1.5 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hivmn/trackDb.ra 1.4 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hivmn1/trackDb.ra 1.5 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/hiv/hivmn2/trackDb.ra 1.5 - lines changed: 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab1/trackDb.ra 1.6 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/equCab2/trackDb.ra 1.11 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/horse/trackDb.ra 1.16 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg12/trackDb.ra 1.17 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg13/trackDb.ra 1.48 - lines changed: 67, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg15/trackDb.ra 1.86 - lines changed: 58, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.encode.ra 1.15 - lines changed: 494, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.ra 1.580 - lines changed: 341, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.ra 1.432 - lines changed: 343, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChip.ra 1.25 - lines changed: 50, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChrom.ra 1.9 - lines changed: 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeCompAndVar.ra 1.22 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeGenes.ra 1.8 - lines changed: 45, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.437 - lines changed: 292, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.74 - lines changed: 76, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg6/trackDb.ra 1.4 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg7/trackDb.ra 1.6 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.477 - lines changed: 164, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/kangarooRat/dipOrd1/trackDb.ra 1.2 - lines changed: 19, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/lancelet/braFlo1/trackDb.ra 1.4 - lines changed: 16, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lizard/anoCar1/trackDb.ra 1.3 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/acidBott_VIRUS/trackDb.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/acidFila_VIRUS_1/trackDb.ra 1.3 - lines changed: 7, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/lowelab/acidFila_VIRUS_9/trackDb.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/acidRods_VIRUS_1/trackDb.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/acidTwot_VIRUS/trackDb.ra 1.3 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/aerPer1/trackDb.ra 1.16 - lines changed: 7, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/zebrafish/danRer3/trackDb.ra 1.54 - lines changed: 99, context: html, text, full: html, text
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  • src/hg/makeDb/trackDb/zebrafish/danRer5/trackDb.ra 1.25 - lines changed: 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer6/trackDb.ra 1.6 - lines changed: 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.57 - lines changed: 143, context: html, text, full: html, text
• A few fixes from release tag being lost in child during override.
  • src/hg/makeDb/trackDb/chicken/trackDb.ra 1.16 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.ra 1.61 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
• Improving error message.
  • src/hg/utils/tdbQuery/tdbQuery.c 1.25 - lines changed: 4, context: html, text, full: html, text
• Tightening up identification of composite tracks with views. Adding in some things from branch.
  • src/hg/oneShot/tdbRewriteViewsToSubtracks/tdbRewriteViewsToSubtracks.c 1.4 - lines changed: 28, context: html, text, full: html, text