src/hg/featureBits/featureBits.c 1.56

Index: src/hg/featureBits/featureBits.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/featureBits/featureBits.c,v
retrieving revision 1.55
retrieving revision 1.56
diff -b -B -U 4 -r1.55 -r1.56
--- src/hg/featureBits/featureBits.c	9 Aug 2009 07:29:28 -0000	1.55
+++ src/hg/featureBits/featureBits.c	4 Dec 2009 23:56:58 -0000	1.56
@@ -721,8 +721,9 @@
 	    continue;
 	}
     else
 	{
+	if (NULL == conn) conn = hAllocConn(database);
 	if (sqlTableExists(conn, t))
 	    continue;
 	}
     found = FALSE;
@@ -801,9 +802,10 @@
     chromInfoList = chromInfoLoadAll(chromSizes);
 else
     chromInfoList = fbCreateChromInfoList(clChrom, database);
 
-conn = hAllocConn(database);
+if (!countGaps)
+    conn = hAllocConn(database);
 checkInputExists(conn, database, chromInfoList, tableCount, tables);
 
 if (!faIndependent)
     {