galt: changes by file

branch to review (2009-12-01 to 2009-12-09) v221

• src/blat/version.doc
  • 1.75 lines changed: 1, context: html, text, full: html, text
    fixing neg strand issue reported by user for pcr psl output
• src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb
  • 1.94 lines changed: 24, context: html, text, full: html, text
    adding feature show_active which filters out the inactive things reaching a completed state
  • 1.93 lines changed: 13, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/encode/hgEncodeSubmit/app/views/layouts/main.rhtml
  • 1.11 lines changed: 11, context: html, text, full: html, text
    adding feature show_active which filters out the inactive things reaching a completed state
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/list.rhtml
  • 1.24 lines changed: 2, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml
  • 1.48 lines changed: 2, context: html, text, full: html, text
    making it a verb
  • 1.47 lines changed: 10, context: html, text, full: html, text
    added db field to show rhtml
  • 1.46 lines changed: 12, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/show_daf.rhtml
  • 1.1 lines changed: 8, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/show_ddf.rhtml
  • 1.1 lines changed: 8, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/encode/hgEncodeSubmit/db/migrate/039_add_db_to_projects.rb
  • 1.1 lines changed: 9, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
  • 1.18 lines changed: 37, context: html, text, full: html, text
    adding projects.db field and display, added show_daf and show_ddf
• src/hg/hgCustom/hgCustom.c
  • 1.135 lines changed: 37, context: html, text, full: html, text
    Added column to display remote ct errors (big*, bam). Fixed some stray </TD> tags. Uses new func javaScriptLiteralEncode().
• src/hg/inc/customTrack.h
  • 1.57 lines changed: 1, context: html, text, full: html, text
    networkErrMsg field added to customTrack struct
• src/hg/lib/customFactory.c
  • 1.112 lines changed: 47, context: html, text, full: html, text
    Added Catch around remote resource (big*, bam) loader when it tries to open the resource
• src/hg/lib/customTrack.c
  • 1.179 lines changed: 61, context: html, text, full: html, text
    splay remote errors if adding new cts. Unless hgCustom, filter out cts with load err (big*, bam) from ctList. Also improved add track list handling using slAddHead and slCat instead of slAddTail.
• src/hg/qaPushQ/pushQ.as
  • 1.15 lines changed: 1, context: html, text, full: html, text
    oops get lockuser
• src/hg/qaPushQ/pushQ.c
  • 1.14 lines changed: 0, context: html, text, full: html, text
    oops get lockuser
• src/hg/qaPushQ/pushQ.h
  • 1.13 lines changed: 1, context: html, text, full: html, text
    oops get lockuser
• src/hg/qaPushQ/pushQ.sql
  • 1.14 lines changed: 1, context: html, text, full: html, text
    oops get lockuser
• src/hg/qaPushQ/qaPushQ.c
  • 1.115 lines changed: 6, context: html, text, full: html, text
    requested feature quicklinks to jump to sections ABCDL
• src/inc/cheapcgi.h
  • 1.69 lines changed: 7, context: html, text, full: html, text
    added new func javaScriptLiteralEncode
• src/jkOwnLib/gfPcrLib.c
  • 1.12 lines changed: 12, context: html, text, full: html, text
    fixing neg strand issue reported by user for pcr psl output
• src/lib/cheapcgi.c
  • 1.126 lines changed: 58, context: html, text, full: html, text
    added new func javaScriptLiteralEncode
• src/utils/qa/weeklybld/buildEnv.csh
  • 1.91 lines changed: 2, context: html, text, full: html, text
    v221 preview