hiram: changes by commit
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branch to review (2009-12-01 to 2009-12-09) v221
- Eliminate duplicate xenoRefGene entry
- src/hg/makeDb/trackDb/mouse/trackDb.ra 1.160 - lines changed: 9, context: html, text, full: html, text
- eliminate duplicate entry for phastConsElements5way
- src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra 1.49 - lines changed: 10, context: html, text, full: html, text
- Eliminate duplicate spanList definition
- src/hg/makeDb/trackDb/human/hg16/trackDb.ra 1.576 - lines changed: 1, context: html, text, full: html, text
- eliminate a duplicate maxHeightPixels definition
- src/hg/makeDb/trackDb/human/hg17/trackDb.encode.ra 1.178 - lines changed: 1, context: html, text, full: html, text
- eliminate duplicate definition for axtNetCb1
- src/hg/makeDb/trackDb/worm/ce2/trackDb.ra 1.36 - lines changed: 11, context: html, text, full: html, text
- Eliminate a stray track definition line for blastzCioSav1
- src/hg/makeDb/trackDb/squirt/ci1/trackDb.ra 1.50 - lines changed: 1, context: html, text, full: html, text
- Eliminate duplicate entry for blastzOikDio0
- src/hg/makeDb/trackDb/squirt/ci1/trackDb.ra 1.51 - lines changed: 11, context: html, text, full: html, text
- eliminate duplicate entries for blastzCioSav1 and blastzOikDio0
- src/hg/makeDb/trackDb/squirt/ci2/trackDb.ra 1.8 - lines changed: 12, context: html, text, full: html, text
- src/hg/makeDb/trackDb/squirt/cioSav2/trackDb.ra 1.7 - lines changed: 12, context: html, text, full: html, text
- fix autoscale to read properly autoScale
- src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra 1.59 - lines changed: 25, context: html, text, full: html, text
- set autoscale to properly read autoscale
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.699 - lines changed: 1, context: html, text, full: html, text
- Eliminate duplicate definitions of chainHg18 and chainMm9 they are already overridden here
- src/hg/makeDb/trackDb/guineaPig/cavPor3/trackDb.ra 1.7 - lines changed: 32, context: html, text, full: html, text
- fixup duplicate chainCalJac1 and chainPanTro2 entries
- src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.39 - lines changed: 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/dog/trackDb.ra 1.24 - lines changed: 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra 1.544 - lines changed: 2, context: html, text, full: html, text
- remove orphaned overrides for humanChainNet and horseChainNet
- src/hg/makeDb/trackDb/chicken/trackDb.ra 1.12 - lines changed: 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/dog/trackDb.ra 1.25 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/fugu/trackDb.ra 1.60 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/lamprey/trackDb.ra 1.5 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/lizard/trackDb.ra 1.5 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/medaka/trackDb.ra 1.16 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/trackDb.ra 1.161 - lines changed: 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/opossum/trackDb.ra 1.33 - lines changed: 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/platypus/trackDb.ra 1.5 - lines changed: 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/stickleback/trackDb.ra 1.19 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tetraodon/trackDb.ra 1.40 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/xenTro/trackDb.ra 1.21 - lines changed: 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebraFinch/trackDb.ra 1.4 - lines changed: 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/trackDb.ra 1.55 - lines changed: 4, context: html, text, full: html, text
- Add lowetooltip.js inclusion on behalf of Andrew Holmes
- src/hg/hgTracks/hgTracks.c 1.1610 - lines changed: 3, context: html, text, full: html, text
- Really do not contact the database unless it is actually required
- src/hg/featureBits/featureBits.c 1.56 - lines changed: 3, context: html, text, full: html, text
- Fix usage message for chromSize argument
- src/hg/featureBits/featureBits.c 1.57 - lines changed: 2, context: html, text, full: html, text
- Final loaded phastCons and phyloP for 46-way alignment
- src/hg/makeDb/doc/hg19.txt 1.66 - lines changed: 39, context: html, text, full: html, text
- Move all the chainNet definitions off to their own file
- src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.1 - lines changed: 559, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra 1.547 - lines changed: 561, context: html, text, full: html, text
- Adding ctgPos2 track for oryCun2
- src/hg/makeDb/trackDb/rabbit/ctgPos2.html 1.1 - lines changed: 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rabbit/trackDb.ra 1.2 - lines changed: 8, context: html, text, full: html, text
- Obsolete genome at this time. May reappear sometime in the future
- src/hg/makeDb/trackDb/rat/rn5/trackDb.ra 1.2 - lines changed: 47, context: html, text, full: html, text
- Adding link to sequencing center project page
- src/hg/makeDb/trackDb/shrew/sorAra1/description.html 1.2 - lines changed: 1, context: html, text, full: html, text
- Some Fire Lab experiments
- src/hg/makeDb/trackDb/worm/ce6/trackDb.ra 1.16 - lines changed: 42, context: html, text, full: html, text
- ensGene default pack
- src/hg/makeDb/trackDb/worm/ce7/trackDb.ra 1.5 - lines changed: 3, context: html, text, full: html, text
- all chains and nets on any Cow browser are now composites
- src/hg/makeDb/trackDb/cow/bosTau2/trackDb.ra 1.8 - lines changed: 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra 1.18 - lines changed: 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra 1.1 - lines changed: 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cow/trackDb.ra 1.4 - lines changed: 7, context: html, text, full: html, text
- adding chainNetRn4 and chainNetHg18 for Cow bosTau browsers and setting appropriate release tags to separate from older individual tracks
- src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.2 - lines changed: 82, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra 1.548 - lines changed: 8, context: html, text, full: html, text
- All chain net tracks in Marmoset are now composite tracks
- src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.1 - lines changed: 39, context: html, text, full: html, text
- src/hg/makeDb/trackDb/marmoset/trackDb.ra 1.6 - lines changed: 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.3 - lines changed: 162, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra 1.549 - lines changed: 8, context: html, text, full: html, text
- Initial contents
- src/hg/utils/phyloTrees/46way.dissect.txt 1.1 - lines changed: 637, context: html, text, full: html, text
- src/hg/utils/phyloTrees/46way.nh 1.1 - lines changed: 21, context: html, text, full: html, text
- src/hg/utils/phyloTrees/rerootTree.pl 1.1 - lines changed: 104, context: html, text, full: html, text
- Initial source appears to work OK
- src/hg/utils/phyloTrees/chainNet.pl 1.1 - lines changed: 77, context: html, text, full: html, text
- Eliminate confusion from chainSelf tracks
- src/hg/utils/phyloTrees/chainNet.pl 1.2 - lines changed: 1, context: html, text, full: html, text
- In same order as conservation track
- src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra 1.2 - lines changed: 25, context: html, text, full: html, text
- Ancient chain and net has no axtChain command.
- src/hg/makeDb/trackDb/human/hg17/bosTau2.chainNet.html 1.1 - lines changed: 153, context: html, text, full: html, text
- Ancient chain track has no axtChain
- src/hg/makeDb/trackDb/mouse/mm7/bosTau2.chainNet.html 1.1 - lines changed: 153, context: html, text, full: html, text
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