src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.13

Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.12
retrieving revision 1.13
diff -b -B -U 4 -r1.12 -r1.13
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	22 Dec 2009 20:16:29 -0000	1.12
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	22 Dec 2009 21:14:16 -0000	1.13
@@ -1142,8 +1142,48 @@
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment net
     type netAlign panTro2 chainPanTro2
 
+track chainNetPanTro1
+release alpha
+compositeTrack on
+shortLabel Chimp Chain/Net
+longLabel Chimp (Nov. 2003/panTro1), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 498
+color 100,50,0
+altColor 255,240,200
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+matrixHeader A, C, G, T
+otherDb panTro1
+chainMinScore 3000
+chainLinearGap medium
+html chainNet
+
+    track chainPanTro1
+    release alpha
+    subTrack chainNetPanTro1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain panTro1
+
+    track netPanTro1
+    release alpha
+    subTrack chainNetPanTro1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment net
+    type netAlign panTro1 chainPanTro1
+
 track chainNetPonAbe2
 release alpha
 compositeTrack on
 shortLabel Orangutan Chain/Net