src/hg/makeDb/trackDb/trackDb.chainNet.ra 1.15

Index: src/hg/makeDb/trackDb/trackDb.chainNet.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.chainNet.ra,v
retrieving revision 1.14
retrieving revision 1.15
diff -b -B -U 4 -r1.14 -r1.15
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra	22 Dec 2009 21:47:49 -0000	1.14
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra	23 Dec 2009 17:59:15 -0000	1.15
@@ -158,8 +158,90 @@
     shortLabel $o_Organism Net
     longLabel $o_Organism ($o_date/$o_db) Alignment Net
     type netAlign danRer6 chainDanRer6
 
+track chainNetXenTro2
+release alpha
+compositeTrack on
+shortLabel Zebrafish Chain/Net
+longLabel Zebrafish (Aug. 2005/xenTro2), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb xenTro2
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+    track chainXenTro2
+    release alpha
+    subTrack chainNetXenTro2
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain xenTro2
+
+    track netXenTro2
+    release alpha
+    subTrack chainNetXenTro2
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign xenTro2 chainXenTro2
+
+track chainNetXenTro1
+release alpha
+compositeTrack on
+shortLabel $o_db Chain/Net
+longLabel Zebrafish (Oct. 2004/xenTro1), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+visibilityViewDefaults chain=pack net=dense
+group compGeno
+noInherit on
+priority 159
+color 0,0,0
+altColor 255,255,0
+type bed 3
+settingsByView chain:spectrum=on
+sortOrder view=+
+matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
+matrixHeader A, C, G, T
+otherDb xenTro1
+chainMinScore 5000
+chainLinearGap loose
+spectrum on
+html chainNet
+
+    track chainXenTro1
+    release alpha
+    subTrack chainNetXenTro1
+    subGroups view=chain
+    shortLabel $o_Organism Chain
+    longLabel $o_Organism ($o_date/$o_db) Chained Alignments
+    type chain xenTro1
+
+    track netXenTro1
+    release alpha
+    subTrack chainNetXenTro1
+    subGroups view=net
+    shortLabel $o_Organism Net
+    longLabel $o_Organism ($o_date/$o_db) Alignment Net
+    type netAlign xenTro1 chainXenTro1
+
 # release alpha until individual oryLat2 tracks are obsolete
 track chainNetOryLat2
 release alpha
 compositeTrack on